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Table 2 Similarity of cDNA-AFLP sequences to a variety of datasets:

From: Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

Fragment ID

Gene annotation

Dataset Comparison

  

A

B

C

D

E

  

BLASTn

BLASTx

BLASTx

BLASTx

BLASTn

176.2-G41-48I

putative disease resistance protein [Malus × domestica]

34

25

22

21

28

176.1-G41-48I

unknown [Malus × domestica]

34

24

23

23

30

171-G41-48I

Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53)

36

24

18

24

30

54.2-M.26R

DNA topoisomerase II [Malus × domestica]

36

24

20

24

26

175-G41-48I

putative WRKY transcription factor 30 [Vitis aestivalis]

38

26

23

24

32

131.4_G41_48_OE

hypothetical protein pNG7269 [Haloarcula marismortui ATCC 43049] gb|AAV44969

38

20

20

23

28

37-G41-48R

 

40

20

18

22

28

136.2-G41-2I

hypothetical protein 12.t00009 [Asparagus officinalis]

40

24

21

23

26

64.4-G41-48OE

Fusarium resistance protein I2C-5-like [Oryza sativa (japonica cultivar-group)]

42

24

21

22

28

201.3-G41-48I

putative leucine-rich repeat transmembrane protein kinase [Malus × domestica]

44

41

39

21

30

200.1-G41-48I

Probable WRKY transcription factor 29

52

64

22

54

26

213-G41-48I

Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65)

56

68

22

52

26

221-G41-48I

Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65)

56

66

22

51

30

7.2_M.26_2

hypothetical protein RT0201 [Rickettsia typhi str. Wilmington] gb|AAU03684.1| cons

64

21

21

22

62

190-G41-48I

Leucine-rich repeat [Medicago truncatula]

418

21

22

22

28

175.2_G41_48I

beclin 1 protein [Malus × domestica]

541

22

23

30

30

81_G41_48I

AT5 g56010/MDA7_5 [Arabidopsis thaliana]

841

22

23

30

769

176.3_G41_48I

protein kinase [Malus × domestica]

280

22

25

30

26

171.1_G41_48I

protein kinase [Malus × domestica]

107

23

24

35

28

4.3_M.26_2I

MYB11 [Malus × domestica]

628

24

21

24

646

165_M.26_2R

protein kinase [Malus × domestica]

168

24

44

51

28

201_M.26R

LYTB-like protein [Malus × domestica]

692

24

24

24

26

98_G41_48

putative chalcone isomerase 4 [Glycine max]

1195

24

22

26

805

3.3_M.26_2I

Os08 g0162600 [Oryza sativa (japonica cultivar-group)]

289

24

22

20

289

137.1_G41_48_I

dbj|BAC57824.1| unknown

472

25

25

27

24

115_G41_2I

chalcone synthase [Malus × domestica]

714

26

24

22

26

200_G41_48I

soluble NSF attachment protein [Malus × domestica]

496

26

25

26

28

4.2_M.26_2I

ATP binding/kinase/protein serine/threonine kinase [Arabidopsis thaliana

936

29

26

29

936

142_G41_48I

flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase

654

37

22

34

293

166_M.26_2R

protein kinase [Malus × domestica

414

44

49

20

26

1.2_M.26_2I

putative hydroquinone glucosyltransferase; arbutin synthase [Malus × domestica]

444

62

23

60

32

112_G4148I

aquaporin 2 [Bruguiera gymnorhiza]

793

116

166

21

34

201_G41_48I

translation initiation factor eIF-4A [Malus × domestica]

309

121

24

21

30

137.2_G41_48I

hypothetical protein [Citrus × paradisi]

507

141

23

21

498

205_G41_48I

glyceraldehyde-3-phosphate dehydrogenase [Panax ginseng]

765

176

22

24

414

  1. ESTs expressed preferentially under fire blight challenge (A), A. thaliana compatibility ESTs (B); A. thaliana incompatibility ESTs (C), similar to A. thaliana Salicylic Acid Response ESTs (D), and Malus EST in tissue challenged by E. amylovora found by Norelli et al, (2009) by suppression subtractive hybridization (SSH) (E). Gene annotations were determined by most informative BLASTx comparision below a predetermined threshold of 1e-3. NA indicates BLASTn similarity score below (A) or above (B-E).