Table 2 Genes with AS events covered by at least 30 ESTs and where each choice is about equally supported.

AT5G36290

Uncharacterised protein family UPF0016 (InterPro: IPR001727)

.1

30

.2

16

RI

100

(U)

34

AT5G62000

Encodes an auxin response factor. Mutants have ... defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons... Increase in seed size due to increased cell proliferation.

.2

16

.3

20

AS

3

(U)

44

AT5G58330

malate dehydrogenase (NADP), chloroplast, putative; FUNCTIONS IN: oxidoreductase activity

.2

33

.1

62

AS

3

(P)

35

AT5G66240

transducin family protein/WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex

.1

13

.2

25

RI

89

(P)

34

AT5G64200

encodes an SC35-like splicing factor ... localized to the nuclear specks.

.1

10

.2

22

RI

190

(U)

31

AT4G35450

Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.

.1

32

.3

39

DS

44

(U)

45

AT4G36690

ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing...defence response to bacterium

.1

21

.2

17

RI

273

(P)

45

AT4G30760

Unknown

.2

19

.1

26

AS

3

(P)

42

AT4G16162

CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST A. thaliana ... match is: serine/threonine protein kinase-related

.2

15

.3

15

ES

58

(P)

50

AT3G23830

encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.

.2

21

.1

17

AS

12

(U)

45

AT3G01540

RNA HELICASE DRH1

.1

28

.2

32

AS

3

(P)

47

AT3G62840

LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoproteinBEST A. thaliana protein match is: small nuclear ribonucleoprotein D2, putative/snRNP core protein D2,

.2

16

.1

18

AS

3

(P)

47

AT2G05990

Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves

.2

24

.1

33

AS

3

(U)

42

AT2G19730

60 S ribosomal protein L28 (RPL28A)

.2

63

.1

67

AS

4

(U)

49

AT2G17442

Unknown

.4

13

.1

24

AS

3

(P)

35

AT2G17442

Unknown

.4

23

.3

12

DS

31

(U)

34

AT2G39730

Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants.

.1

201

.2

187

AS

11

(P)

48

AT1G64750

Unknown

.1

18

.2

20

RI

90

(U)

47

AT1G67700

Unknown

.2

22

.1

18

DS

14

(P)

45

AT1G69510

Unknown

.1

22

.3

13

AS

5

(U)

37

AT1G71470

Unknown

.2

21

.1

9

AS

9

(P)

30

AT1G80380

encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle

.2

26

.3

13

DS

57

(P)

33

AT1G26850

dehydration-responsive family protein; LOCATED IN: Golgi apparatus, membrane; CONTAINS InterPro DOMAIN/s: methyltransferase putative

.2

9

.3

21

DS

64

(U)

30