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Table 1 Haplotypes for SPSII gene obtained in wheat A and B genomes

From: Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses

Haplotypes -A Genome

SNP1 (Exonic, 1432 bp

SNP2* Exonic, 1554 bp)

SNP3* (Exonic, 1599 bp)

Cultivars per haplotype

Haplotypes-B genome

SNP1 (Intronic, 451 bp)

SNP2 (Intronic, 523 bp)

SNP3, (Intronic 793 bp)

SNP4 (3'UTR)

Cultivars per haplotype

SPShap1

C

G (ARG)

C (ALA)

10

SPShap1

A

T

G

C

15

SPShap2

T

G (ARG)

T (VAL)

9

SPShap2

G

T

A

G

3

SPShap3

T

G (ARG)

C (ALA)

6

SPShap3

G

T

G

G

6

SPShap4

C

A (LYS)

C (ALA)

2

SPShap4

G

C

G

G

3

    

Total = 27

     

Total = 27

  1. Note: Position of the SNPs are based on sequence alignment (supplementary Figure 1). Asterisk showed the location location of non synonymous
  2. SNPs.