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Table 3 Sequence divergence at marker regions between the DIP-allele and its non-DIP homolog's in T. officinale

From: Genetic fine-mapping of DIPLOSPOROUS in Taraxacum (dandelion; Asteraceae) indicates a duplicated DIP-gene

Marker region

S4

 

S7

 

S10-Flank

 

S11

Distance to DIP (cM)

1.6

 

0.4

 

0.2

 

3.5

Sequence length (bp)

375

 

317

 

329

 

323

Plants

S

F

Aa

 

S

F

A

 

S

F

A

 

S

F

A

Number of alleles

            

   d1

7

5

-

 

5

2

-

 

5

1

-

 

15

8

-

   d2

5

-

3

 

8

-

-

 

2

-

-

 

1

-

-

   D

-

7

5

 

-

6

2

 

-

4

13

 

-

3

14

   p /q b

-

2

3

 

2/3

2

2/6

 

2

2/3

3

 

1

-

-

   singles

5

1

5

 

2

4

7

 

1

4

2

 

-

6

1

   Total

17

15

16

 

20

14

17

 

10

14

18

 

17

17

15

ASD (%)

            

   d1-d2

1.6

 

2.8

 

7.3 c

 

0.6

   d1-D

0.8

 

2.2

 

3.0   

 

1.5

   d2-D

1.9

 

3.9

 

6.1 c

 

1.5

  1. a S = S2.125; F = F1.15; A = A68
  2. b p and q represent sequences that were found more than once in an individual and possibly include the d3 allele in F1.15, d4 and d5 alleles in A68, or are paralogs; both p and q usually represent different sequences in the different individuals
  3. c this high percentage of ASD is probably the result of a comparison between paralogs rather than homolog's
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BMC Plant Biology

ISSN: 1471-2229

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