Table 4 Enrichment of putative MYB-target cis-elements in promoters of chilling upregulated genes.
Cluster | Motif | Putative elementa | Associated class of MYB (putative)b | % (TIC)c | e-value |
|---|---|---|---|---|---|
C100A | AAAACCAT | MYB2-box-like | R2R3-MYB | 75 (11.59) | 6e-004 |
| Â | CTTTTGTT | GA response element-like | R1-MYB/R2R3-MYB | 60 (12.03) | 1e-004 |
| Â | TGTGGAAG | Pyrimidine box-like | R1-MYB/R2R3-MYB | 55 (11.66) | 3e-004 |
| Â | TGTGGAAG | MYB2-box-like | R2R3-MYB | 52 (13.26) | 6e-005 |
C99 | CATTTGTT | GA response element-like | R1-MYB/R2R3-MYB | 64 (12.23) | 2e-004 |
| Â | GCTGTGGT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 56 (11.26) | 3e-004 |
C99A | TTTTTTCA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 63 (13.88) | 3e-004 |
| Â | G(A8) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 63 (13.88) | 6e-005 |
C97 | (c/t)(A7) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 73 (16.75) | 2e-004 |
| Â | TAA(T6) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 67 (14.37) | 4e-004 |
C97A | AAAATCAA | MYB2-box-like | R2R3-MYB | 71 (12.93) | 4e-004 |
| Â | AAAGAAAAA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 66 (15.13) | 2e-004 |
| Â | ACACAAAC | GA response element-like | R1-MYB/R2R3-MYB | 59 (11.48) | 2e-004 |
| Â | TTCTTGCT | GA response element-like | R1-MYB/R2R3-MYB | 59 (11.92) | 2e-004 |
| Â | TTTTTTTTAA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 59 (16.60) | 2e-005 |
| Â | TTGTTTTGT | GA response element-like | R1-MYB/R2R3-MYB | 57 (12.93) | 3e-004 |
| Â | ATTTAACA | GA response element-like | R1-MYB/R2R3-MYB | 55 (11.99) | 3e-004 |
| Â | GCTGCTGC | GA response element-like | R1-MYB/R2R3-MYB | 50 (12.99) | 8e-004 |
C94 | TAGTTTTT | MYB1-box-like | R2R3-MYB | 70 (11.74) | 2e-004 |
| Â | CTCCCTCCG | GA response element-like | R1-MYB/R2R3-MYB | 57 (13.64) | 2e-004 |
| Â | AGCTGGAG | GA response element-like | R1-MYB/R2R3-MYB | 55 (12.00) | 9e-005 |
| Â | AGCATTTG | GA response element-like | R1-MYB/R2R3-MYB | 51 (12.29) | 5e-004 |
C91 | TTCTTTTTTT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 58 (15.52) | 4e-004 |
| Â | TTAGGGTTT | MYB2-box-like | R2R3-MYB | 58 (12.70) | 2e-004 |
C90A | TTTTTTCA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 63 (13.45) | 4e-004 |
| Â | AAATCCAA | GA response element-like | R1-MYB/R2R3-MYB | 57 (12.72) | 1e-003 |
| Â | TTAGTTTAT | MYB1-box-like | R2R3-MYB | 52 (12.89) | 2e-004 |
| Â | TTGTTTTT | GA response element-like | R1-MYB/R2R3-MYB | 51 (13.14) | 2e-004 |
C88A | GAAACCAT | MYB2-box-like | R2R3-MYB | 78 (11.18) | 1e-004 |
| Â | CGGTGGAT | MCB1/MCB2-like | R2R3-MYB | 73 (11.07) | 1e-004 |
| Â | TTTTTTCA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 69 (13.14 | 6e-004 |
| Â | AAACCCAA | GA response element-like | R1-MYB/R2R3-MYB | 63 (12.32 | 2e-004 |
| Â | GGGGATCG | MYB2-box-like | R2R3-MYB | 58 (11.82) | 1e-004 |
| Â | GAAACCAT | MYB2-box-like | R2R3-MYB | 58 (11.95) | 1e-004 |
| Â | GTGATTAGC | MYB2-box-like | R2R3-MYB | 55 (11.32) | 9e-004 |
| Â | G(T8) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 52 (14.78) | 7e-004 |
| Â | AGCTGGAG | GA response element-like | R1-MYB/R2R3-MYB | 50 (11.89) | 1e-004 |
C87A | TAAGTTTT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 65 (12.65) | 8e-004 |
| Â | AACAATTT | GA response element-like | R1-MYB/R2R3-MYB | 63 (11.80) | 5e-004 |
| Â | AAACCATG | MYB2-box-like | R2R3-MYB | 61 (12.27) | 8e-004 |
| Â | GTTTTTTTT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 54 (15.01) | 4e-004 |
| Â | ATATTTCC | Pyrimidine box-like | R1-MYB/R2R3-MYB | 50 (12.51) | 6e-004 |
C86 | AAATCCAA | MYB2-box-like | R2R3-MYB | 60 (12.33) | 3e-004 |
| Â | AACCATGG | MYB2-box-like | R2R3-MYB | 60 (11.10) | 3e-004 |
C86A | TTTTTTCA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 72 (13.48) | 3e-004 |
| Â | TTTTTATT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 68 (14.18) | 2e-004 |
| Â | ATCATTTT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 62 (12.27) | 7e-004 |
| Â | TCCCTTTT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 57 (13.18) | 7e-004 |
| Â | ACATTTTT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 50 (13.18) | 2e-004 |
C83 | GGAAAAAA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 67 (13.45) | 4e-004 |
C83A | GAAAAAGG | Pyrimidine box-like | R1-MYB/R2R3-MYB | 61 (11.91) | 4e-004 |
C80 | AAATCCTT | GA response element-like | R1-MYB/R2R3-MYB | 72 (11.89) | 8e-005 |
| Â | TTTTTTCA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 55 (13.28) | 4e-004 |
| Â | TTTTCAAT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 53 (12.23) | 2e-003 |
C81 | (c/g)(A9) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 68 (15.62) | 3e-004 |
' | GG(A6) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 64 (13.23) | 4e-004 |
| Â | (c/g)AT(A5) | Pyrimidine box-like | R1-MYB/R2R3-MYB | 61 (12.19) | 3e-004 |
| Â | ATATTTTC | Pyrimidine box-like | R1-MYB/R2R3-MYB | 54 (12.51) | 4e-004 |
C79 | TTTTTTCA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 65 (13.14) | 2e-003 |
| Â | GTGATATC | Pyrimidine box-like | R1-MYB/R2R3-MYB | 62 (11.12) | 6e-004 |
| Â | CATCTTTT | GA response element-like | R1-MYB/R2R3-MYB | 53 (12.53) | 3e-004 |
| Â | ATTAAATTA | Pyrimidine box-like | R1-MYB/R2R3-MYB | 53 (13.65) | 3e-004 |
C78 | TTAGGTTTT | MYB2-box-like | R2R3-MYB | 68 (12.28) | 4e-004 |
| Â | CATTTGTT | GA response element-like | R1-MYB/R2R3-MYB | 64 (12.23) | 2e-004 |
| Â | GCTGTGGT | Pyrimidine box-like | R1-MYB/R2R3-MYB | 56 (11.26) | 3e-004 |