Skip to main content

Table 3 Plant Ontology

From: RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

Tissue

DAF

Ontology term

Ontology identifier

Young leaf

NA

0.4 Leaflets unfurled

SOY:0000252

Flower

NA

F0.4 Open flower

SOY:0001277

One cm pod

7 DAF

F0.7 Small size pod

SOY:0001280

Pod-shell

10-13 DAF

F0.8 Pod medium size

SOY:0001281

Pod-shell

14-17 DAF

F0.9 Full pod size

SOY:0001282

Seed

10-13 DAF

S1.06 Cotyledon stage

SOY:0001290

Seed

14-17 DAF

S1.06 Cotyledon stage

SOY:0001290

Seed

21 DAF

S1.07 Early maturity stage 1

SOY:0001291

Seed

25 DAF

S1.07 Early maturity stage 1

SOY:0001291

Seed

28 DAF

S1.07 Early maturity stage 1

SOY:0001291

Seed

35 DAF

S1.08 Early maturity stage 2

SOY:0001292

Seed

42 DAF

S1.09 Mid seed maturity

SOY:0001293

Root

NA

Root structures

SOY:0001183

Nodule

NA

Bacterial root nodule

SOY:0001301

  1. Ontology terms for the 14 tissues in this study. Days After Flowering (DAF) are approximated based on pod length and seed size.