Gene1 | Primer sequence 5'-3' (forward/reverse) | Amplicon length (bp) | qPCR efficiency | Reference | GenBank accession number* |
---|---|---|---|---|---|
a) Reference genes | |||||
Ubiquitin | TCTGAGGCTTCGTGGTGGTA/AGGCGTGCATAACATTTGCG | 99 | 2.16 | [82] | GU585868 |
Actin | CTTGCATCCCTCAGCACCTT/TCCTGTGGACAATGGATGGA | 82 | 2.11 | [56] | GU585869 |
GAPDH | TTCTCGTTGAGGGCTATTCCA/CCACAGACTTCATCGGTGACA | 70 | 1.84 | [56] | GU585870 |
EF1-a | GAACTGGGTGCTTGATAGGC/AACCAAAATATCCGGAGTAAAAGA | 164 | 1.90 | [56] | GU585871 |
SAND | CAACATCCTTTACCCATTGACAGA/GCATTTGATCCACTTGCAGATAAG | 76 | 1.88 | [56] | GU585872 |
NAD5 | GATGCTTCTTGGGGCTTCTTGTT/CTCCAGTCACCAACATTGGCATAA | 181 | 1.82 | [83] | GU585873 |
b) Candidate genes | |||||
PAL | TCTGGTGGAAGGAATCCAAG/CAAAGTGCCACCAGGTAGGT | 230 | 1.77 | [62] | GU585850 |
CHS1 | AGCCAGTGAAGCAGGTAGCC/GTGATCCGGAAGTAGTAAT | 155 | 1.74 | [61] | GU585851 |
CHS2 | TCTGAGCGAGTATGGGAACA/AGGGTAGCTGCGTAGGTTGG | 294 | 1.80 | [61] | GU585852 |
CHS3 | TCACTTGGACAGCCTTGTTG/CAATTCGAACATGGGCTTCT | 106 | 1.87 | $ | GU585853 |
CHI1 | CAGGCAACTCCATTCTTTTC/TTCTCTATCACTGCATTCCC | 103 | 1.69 | [84] | GU585854 |
CHI2 | TCCAGATCAAGTTCACAGCA/GAAACAAGAGCCTCAAAGAA | 127 | 1.60 | [84] | GU585855 |
F3'H | ATTCGCCACCCTGAAATGAT/AGCCGTTGATCTCACAGCTC | 196 | 1.82 | [15] | GU585856 |
F3'5'H | GAAGTTCGACTGGTTATTAACAAAGAT/ AGGAGGAGTGCTTTAATGTTGGTA | 156 | 1.68 | [15] | GU585857 |
F3H1 | CCAATCATAGCAGACTGTCC/TCAGAGGATACACGGTTGCC | 69 | 1.83 | [84] | GU585858 |
F3H2 | CTGTGGTGAACTCCGACTGC/CAAATGTTATGGGCTCCTCC | 129 | 1.70 | [84] | GU585859 |
DFR | GAAACCTGTAGATGGCAAGA/GGCCAAATCAAACTACCAGA | 114 | 1.85 | [84] | GU585860 |
LDOX | AGGGAAGGGAAAACAAGTAG/ACTCTTTGGGGATTGACTGG | 109 | 1.76 | [84] | GU585861 |
UFGT | GGGATGGTAATGGCTGTGG/ACATGGGTGGAGAGTGAGTT | 152 | 1.74 | [84] | GU585862 |
MybA1 | TAGTCACCACTTCAAAAAGG/GAATGTGTTTGGGGTTTATC | 66 | 1.67 | [84] | GU585863 |
FLS1 | CAGGGCTTGCAGGTTTTTAG/GGGTCTTCTCCTTGTTCACG | 154 | 1.82 | [85] | GU585864 |
LAR1 | AAATGAACTCGCATCTGTGT/CTGTGGGATGATGTTTTCTC | 109 | 1.75 | [82] | GU585865 |
LAR2 | TGATATCAGCTGTGGGTGGA/CCCAAATTCTGATGGAAGGA | 104 | 1.74 | $ | GU585866 |
ANR | GCTGCTGTTACCATCAATCA/GCAGGATAGCCCCAAGTAGG | 113 | 1.62 | [82] | GU585867 |