From: Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana
Modified Nucleosides | Homologous genes found in Arabidopsis |
---|---|
D | At4g38890(Dus1,Dus2,Dus3), At5g67220(Dus1, Dus2, Dus3), At5g47970(Dus4), At3g49640(Dus1,Dus2,Dus3,Dus4), At3g63510(Dus1,Dus4) |
Ψ | At1g76120cyto(Pus1,Pus3), At1g20370(Pus1,Pus3), At1g34150nucl(Pus3,Pus1), At3g06950chlo(Pus3,Pus1), At2g30320(Pus1,Pus3), At5g35400(Pus1,Pus3),At5g14460chlo(Pus4), At5g51140cyto(Pus6, Pus8, Pus9), At3g04820(Pus7), At3g52260cyto(Pus9,Pus8,Pus6), At1g76050chlo(Pus8, Pus9,Pus6), At3g19440(Pus9,Pus8,Pus6), At1g56345(Pus9), At1g78910(Pus9,Pus6) |
ncm5U | At3g19980cyto, At1g50370cyto, At5g55260cyto, At4g26720cyto, At1g69960cyto, At3g58500cyto, At2g42500cyto, At1g10430cyto, At1g59830cyto (Sit4 family), At1g07990, At2g28360, At3g45190, At1g30470cyto(Sap185, Sap190), At2g15910(Kti11), At1g13870nucl(Kti12), At1g27060nucl, At5g63860nucl, At3g55580nucl, At5g16040, At3g53830nucl, At3g26100nucl (Kti13 family), At5g57015, At1g03930, At4g26100cyto, At1g72710 etc.(Kti14 family), At5g13680cyto(Elp1) |
m1A | At5g14600(Trm61), At2g45730(Trm6) |
m5C | At2g22400, At4g40000, At5g55920nucl, At4g26600chlo, At3g13180chlo, At1g06560, At5g66180, At5g26180(Trm4) |
Cm | At5g01230, At4g25730, At5g13830cyto(Trm7) |
m7G | At5g24840(Trm8), At5g17660chlo(Trm8), At1g03110nucl(Trm82) |
m5U | At3g21300mito, At2g28450nucl(Trm2) |
I | At1g48175, At1g68720nucl(Tad2), At5g24670nucl(Tad3) |
Um | no gene homolog found |
m1I | At1g01760nucl(Tad1),At3g56120cyto, At4g27340chlo, At4g04670cyto(Trm5) |
Gm | At4g17610(Trm3), At5g01230, At4g25730, At5g13830cyto(Trm7) |
m1G | At3g56120cyto, At4g27340chlo, At4g04670cyto(Trm5), At5g47680(Trm10) |
m2G | At3g26410cyto(Trm11), At1g78190, At1g22270(Trm112) |
ac4C | At5g12410(TAN1) |
m22G | At3g02320, At5g15810mito, At3g56330chlo(Trm1) |
Am | At4g01880chlo(Trm13) |
t6A | At5g60590chlo(Sua5) |
ms2io6A | At4g36390chlo, At1g72090cyto(MiaB), At5g20040/ATIPT9, At2g27760/ATIPT2cyto(MOD5) |
Y | At1g75200(Tyw1), At4g04670cyto(Tyw3+Tyw4c+Tyw2) |