From: A candidate gene association study on muscat flavor in grapevine (Vitis viniferaL.)
Parameters | Overall (coding/non-coding) | Muscat (coding/non-coding) | Neutral (coding/non-coding) | Aromatic (coding/non-coding) | Neutral Muscats (coding/non-coding) | Muscat-like aromatic mutants (coding/non-coding) |
---|---|---|---|---|---|---|
Varieties | 148 | 72 | 48 | 20 | 5 | 3 |
Number of polymorphic sites | 102 (25/77) | 77 (22/55) | 99 (22/77) | 64 (22/42) | 48 (12/37) | 26 (10/16) |
Frequency of polymorphic sites | 1 per 47 bp (1 per 86 bp/1 per 35 bp) | 1 per 62 bp (1 per 98 bp/1 per 47 bp) | 1 per 49 bp (1 per 98 bp/1 per 35 bp) | 1 per 76 bp (1 per 98 bp/1 per 64 bp) | 1 per 100 bp (1 per 179 bp/1 per 73 bp) | 1 per 191 bp (1 per 215 bp/1 per 176 bp) |
Synonymous changes | 15 | 14 | 15 | 14 | 8 | 6 |
Non-synonymous changes | 10 | 8 | 7 | 8 | 4 | 4 |
Synonymous vs non-synonymous mutations | 1.5:1 | 1.75:1 | 2:1 | 1:75:1 | 2:1 | 1.5:1 |
Mean nucleotide diversity (π/θ) | 0.0031/0.0034 | 0.0026/0.0029 | 0.0035/0.0040 | 0.0032/0.0034 | 0.0034/0.0036 | 0.0018/0.0023 |
C | 10.8 | 1.999 | 16.605 | 9.9 | nd | nd |
Mean Tajima D | -0.19 | -0.35 | -0.42 | 0.67 | nd | nd |
Fu and Li's D* | 0.91 | 1.58* | 1.15 | 1.30 | nd | nd |