Sample details | GEO/AT-EXP | Rep | No. Arrays | Tissue | Publications |
---|---|---|---|---|---|
Development - Rice | Â | Â | Â | Â | Â |
Dry seed and aerobic germination (up to 24 h) cv. Amaroo | E-MEXP-1766 | 3 | 15 | Dry and germinating seed | [83] |
Dry seed and anaerobic germination (up to 24 h) and switch conditions cv. Amaroo | E-MEXP-2267 | 3 | 36 | Imbibed seed | [84] |
Aerobic and anaerobic grown coleoptiles cv. Nipponbare | GSE6908 | 2 | 4 | Coleoptile | [85] |
Embryo, endosperm, leaf and root from 7-d seedling, 10 d seedling cv. Zhonghua | GSE11966 | 2 | 10 | Embryo, endosperm, leaf and root from 7-d seedling, 10-d seedling | [86] |
Stigma, Ovary cv. Nipponbare | GSE7951 | 3 | 6 | Stigma, ovary | [87] |
Mature leaf, young leaf, semi apical meristem, inflorescence, seed cv. IR64 | GSE6893 | 3 | 45 | Mature leaf, young leaf, semi apical meristem, inflorescence, seed | [39] |
Abiotic stress - Rice | Â | Â | Â | Â | Â |
Drought, salt, cold stress cv. IR64 | GSE6901 | 3 | 12 | Seedling | [39] |
Heat stress cv. Zhonghua | GSE14275 | 3 | 6 | Seedling | [71] |
Salt stress on 2 cultivars; indica, FL478 (salt tolerant), indica, IR29 (salt sensitive) | GSE3053 | 3 | 11 | Crown and growing point | [88] |
Salt stress on 4 cultivars; japonica, m103 (salt sensitive), indica, IR29 (salt sensitive), japonica, Agami (salt tolerant), indica, IR63731 (salt tolerant) | GSE4438 | 3 | 24 | Panicle initiation stage | [89] |
Salt stress on root using 4 cultivars; FL478 (salt tolerant), IR29 (salt sensitive), IR63731 (salt tolerant), Pokkali (salt tolerant) | GSE14403 | 3 | 23 | Root | - |
Fe and P treatments cv. Nipponbare | GSE17245 | 2 | 16 | Root | [90] |
Arsenate treatment cv. Azucena | GSE4471 | 3 | 12 | Seedling | [91] |
Physical stress at roots tips cv. Bala | GSE10857 | 3 | 12 | Root tip | [92] |
Biotic stress - Rice | Â | Â | Â | Â | Â |
S. Hermonthica plant parasite infection cv. Nipponbare (resistant), IAC165 (susceptible) | GSE10373 | 2 | 24 | Root | [93] |
M. grisea blast fungus infection cv. Nipponbare | GSE7256 | 2 | 8 | Leaf | [94] |
Rice stripe virus infection cv. WuYun3, KT95-418 | GSE11025 | 3 | 12 | Seedling | - |
Infection with bacteria X. Oryzae pv. oryzicola and oryzae cv. Nipponbare | GSE16793 | 4 | 60 | Whole-plant tissue | - |
Hormone treatment - Rice | Â | Â | Â | Â | Â |
Cytokinin treatment on root and leaf cv. Nipponbare | GSE6719 | 3 | 24 | Root, 2-week old seedlings | [95] |
Indole-3-actetic acid and benzyl aminopurine treatment cv. IR64 | GSE5167 | 2 | 6 | Seedling | [96] |
Development - Arabidopsis | Â | Â | Â | Â | Â |
AtGenExpress developmental tissue microarray dataset (wildtype only) | E-AFMX-9 | 3 | 147 | Wild type, different tissues | [97] |
Abiotic stress - Arabidopsis | Â | Â | Â | Â | Â |
AtGenExpress global stress expression dataset (wildtype) | GSE5620, GSE5624, GSE5623, GSE5621, GSE5628 | 2 | 30 | Wild type, shoots | [80] |