Skip to main content

Table 2 Characteristics of the mapped SSR loci from a Musa genomic library (mMaCIR102 to mMaCIR 305) and from EST sequences (mMECIR0494 to mMECIR0500).

From: A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas

SSR

EMBL

motif

LG

forward primer

reverse primer

Ann (°C)

Size (bp)

mMaCIR102

AM950328

(AG)10,(TG)5

6

TGTTGGATTGGCTTCATC

CTTCGTTCAATGGTCTCCT

55

220

mMaCIR103

AM950329

(CT)14,

3

CCTCTTCTCCCTGTGTTG

CGGTTTAACATACCTATTCTTG

54

179

mMaCIR105

AM950331

(CA)8,(CT)15

6

CATCCACTTGCTTTTCCA

CTTCACGGCTTCCACA

56

264

mMaCIR108

AM950334

(CA)7,(CA)4,

2

ACGCATGGTAAAGTGGAA

ACATTCAAATCACGTTGCT

55

111

mMaCIR109

AM950335

(CA)13,

4

ACTCTAGTTCCAGAATAACTCCA

CAATCTTCATTAGCCAGTTGT

55

204

mMaCIR110

AM950336

(AC)7,(GA)6,

3

GGTGAACTGATGTGCGA

TCTTTCAACGGAATAAGCA

55

244

mMaCIR111

AM950337

(CA)8,

6

TCGTATGGAACAACAGTCC

CTTTCACCTTCAAACAGCA

55

137

mMaCIR112

AM950338

(CA)5,(CA)15

7

GTTCGGCTGGAGGTAGTT

AAGAACACGAAGGCAGG

55

330

mMaCIR113

AM950339

(CA)10,

10

TCAAGTATTTCACCGTATTGC

TTACCACCCTGTCATCTTTC

55

207

mMaCIR114

AM950340

(AC)7,(CT)28

8

GCAAGCCAAAGGGAA

ACCAACAAAGAATGGTGTAA

54

222

mMaCIR115

AM950341

(CA)2,

11

CAAGAGACTACCACCGAAGA

TGATTCTCACGACGTATGG

55

114

mMaCIR116

AM950342

(TC)2,(TC)20

11

ACACAAAGAAACCAGCCA

CGTCCCATCGTCTCCT

55

202

mMaCIR117

AM950343

(TC)20,

7

GTTTGTGGAATAAGTGGGAA

ATGAGGGAGTTAGTGGTGG

55

214

mMaCIR119

AM950345

(CA)9,(TA)6,(CA)5,

10

TGAAAAGCAATCCAACCT

ACCCTGAAATGTTTGTCTTT

54

395

mMaCIR122

AM950348

(GT)8,

7

CGGTGACACTGGAAGGT

CAACTGAAGAACTGCCACTAA

56

204

mMaCIR124

AM950350

(AC)7,

9

ACCTTGACAGCCCTCTTC

ATCAATCATTTCTGGGGTT

55

63

mMaCIR129

AM950355

(CA)6,

5

CTAACCTTTGATTCTGTTTG

GTCCCTGATACACCATTC

50

214

mMaCIR130

AM950356

(TG)17,

6

TTAAACGTCTCCGTGTCTTC

TTGCATGAGGCTGGG

56

311

mMaCIR137

AM950363

(TC)12,

4

CGTATTCTACATCTGCTTCTTT

GCAGTGATTAGGTGATGATTT

54

223

mMaCIR138

AM950364

(CA)7,

3

TCATTCTCATGCGGAACT

CGGTGGATGTTGTTGG

55

173

mMaCIR139

AM950365

(GA)18,

5

TCGTCCCCTACTGCCT

ATGCTTCCGTTTGGCT

55

187

mMaCIR150

AM950440

(CA)10

3

ATGCTGTCATTGCCTTGT

GAATGCTGATACCTCTTTGG

55

238

mMaCIR151

AM950441

(CT)21

3

TATCCACCTCCTGGCAC

GCCAAACATCACCCAAC

55

172

mMaCIR152

AM950442

(CTT)18,(CT)17,(CA)6

4

CCACCTTTGAGTTCTCTCC

TTTCCCTCTTCGATTCTGT

55

163

mMaCIR154

AM950444

(CT)17

4

CATTCAGCATGGAAACCT

CTTCCTCAAACTGCTCCTC

55

311

mMaCIR156

AM950446

(TG)23

4

CTTTCTGAAGGAAATTCTGAC

AGTGCAGCCCAATGAA

54

210

mMaCIR157

AM950447

(CA)9,(TA)7

11

TGGTATTATTTCATAGCCCTTC

ATGGTATTGTTGGATGGTGT

55

272

mMaCIR162

AM950452

(CA)8

11

CTGCCTGTCCCACGA

GCGGCCATCATAATTCC

57

161

mMaCIR163

AM950453

(AC)14

1

TGAAACAATCTTCATCAGCT

TCTGGACTTGGATGCTATTT

55

247

mMaCIR167

AM950367

(AC)7,

1

CACTTCCACCTCTGCATC

GGTCTACTAACTTGAACACGAAC

55

336

mMaCIR168

AM950368

(CA)7,

10

GCACCAAACCAGTCCTAC

CGTCTCAGTTGCCGTG

55

243

mMaCIR169

AM950369

(CT)14,(CA)1

3

TTTGGAGGAGACCATGATT

GCATTACATATCCTGCCTTT

55

297

mMaCIR170

AM950370

(CA)8,

3

GGGCCTCCATAAGCAA

ACTTACCTTCCTGCCCAC

55

202

mMaCIR171

AM950371

(CA)5,(GA)10

7

GTAATACAAGTCTTCAGAGCAT

CTGTTTCGCCACTATCTT

51

192

mMaCIR172

AM950372

(CT)19,

1

CAGCTAATGCCAAACCC

CGACTTCGAGCGAGC

55

258

mMaCIR174

AM950374

(AG)13,

2

GAACCCACCTCCCTCTT

TGGGATTCCTGAGTGCT

55

167

mMaCIR180

AM950380

(CA)7,

1

GCCTCAGCCTCATCATC

CACCCACTCGACCCA

55

226

mMaCIR182

AM950382

(TC)22,

9

AACGCTTCTGCCTTGTT

TGAGACGTATTGCCCTAGTT

55

150

mMaCIR184

AM950384

(TG)7,

3

TGTCATCGGCATAGACTG

TGGAATTGAACTGAAGCC

54

314

mMaCIR185

AM950385

(TG)8,

2

CATTTCTATTCCCAGTCCC

CCAATGTTACTTCCATGCT

54

181

mMaCIR188

AM950388

(TG)9,(TA)7,

3

GTGCTTGTTCGCTTGTTT

AGCCCAAGTATCCCACC

56

160

mMaCIR189

AM950389

(CT)3,(CT)16

2

GGGAGGGCAGAGGAA

GCCGAACTTGGTAATGTG

55

259

mMaCIR192

AM950458

(TG)8

3

TGACCTAGCACAACGCA

GCTTATGTTTCATCGCCTT

56

133

mMaCIR193

AM950459

(AC)8

9

TGTCCCTATCTGTCCTCTTT

CGCTTTGGAGTGTGCT

54

301

mMaCIR195

AM950461

(GA)11,(GA)6

5

GAATCGCCTTAGTCTCACC

TCATGTGCTCCCATCTTT

55

285

mMaCIR196

AM950462

(TA)4,(TC)17,(TC)3

7

GCTCCAAACCTCCCTTT

CGATGCCACACTGGAC

55

173

mMaCIR210

AM950476

(GA)3,(TG)12,(AG)5

7

GGAAGGTGGCATGAAAG

TAACCTGATACCCATGTATTGA

55

319

mMaCIR214

AM950480

(AC)7

10

CCATTGAGAGATCAACCC

CTATTTGACGTTGGTGGTC

54

107

mMaCIR215

AM950481

(GT)7,(AT)3

4

AAGTTGGAGATATAGAATGGGT

TCCAGTGAATATGGATCAGT

54

327

mMaCIR219

AM950485

(GA)18,(AC)1

8

GGGTAAGCTCAAGATGGAA

CAGACGCTAAACGACACC

55

320

mMaCIR228

AM950494

(CT)18,(AC)7

5

CAAGCATGTTAGTTTGGGA

AAGGTGCATCCAAGGG

55

197

mMaCIR229

AM950495

(GA)22

10

CTGGGTTCCTCACCTTCT

GAAACACCATGTCCCAAA

55

253

mMaCIR235

AM950501

(CT)7,(CT)8

2

CCATCCCAGGCCATA

GCCCAGAGTCCGAAAG

55

329

mMaCIR241

AM950503

(TC)20

3

GCTAAGCATCAAGTAGCCC

ACGAACAAGCAATCAAAGTAG

55

297

mMaCIR247

AM950395

(GT)10,

5

AATGGATTGGGCATCAG

GGAGGGAGGAGGGTTT

55

178

mMaCIR248

AM950509

(TG)6,(GA)6,(AG)8

3

ATGCCTGCTACCACCTC

GCAGTTCCACAGTCCAAG

55

251

mMaCIR249

AM950396

(TG)9,

4

TGTATTGTATCCCTAATGTCCC

CCTTACTAGCCAATTACGTGAG

56

279

mMaCIR252

AM950510

(TC)9,(TC)3

4

TCGTAAGCGAAAGGTCG

CGAACGCACTACCACTATG

56

180

mMaCIR254

AM950512

(CT)25

9

CATGGAGGGTTAGGAGC

ATGCTTATTCTATGGTGGTTG

54

180

mMaCIR256

AM950399

(CA)7,

4

TTGCGGGAAACTGCT

GTTGCACTGCCCACTT

54

280

mMaCIR257

AM950400

(CA)7,

9

CTTTACCGAGTTGAGGG

TCATATCAGAAGATAGCCAA

51

234

mMaCIR260

AM950515

(TG)8

8

GATGTTTGGGCTGTTTCTT

AAGCAGGTCAGATTGTTCC

55

189

mMaCIR261

AM950516

(CA)13

6

TATCAGGCATACGTTCTGTAG

AAAGAAGGTGGGTGATAGG

54

202

mMaCIR264

AM950519

(CT)17

4

AGGAGTGGGAGCCTATTT

CTCCTCGGTCAGTCCTC

54

235

mMaCIR272

AM950408

(AC)6,(CT)5,

11

CTCACCGGATGGCAC

GGCATTAAGTTTCAGGAATAAG

55

171

mMaCIR273

AM950521

(TC)22,(CT)6

9

TGGTTGAAGATTCCCAT

GATCAAGAGGTGACAAACC

53

211

mMaCIR274

AM950409

(AC)11,

5

TAGCTCTTTCAACACTCTCATC

CTGGAGGCAGCGAAC

54

150

mMaCIR277

AM950523

(TG)12

5

ACGATAGGATTATTGGCTGT

GGCTCTTAATTTGACAAGAA

54

212

mMaCIR280

AM950412

(TC)7,(AC)7

4

GGGTCCCTGTTGGCT

TTGCAGATTAGGGTGGG

55

221

mMaCIR282

AM950414

(AG)8,(AG)3,(TG)

9

CATCCTGTTGCTCCCTC

AAGAATCTAGCAGCATCCAA

55

209

mMaCIR285

AM950416

(TC)21,(AC)7,(AC)5

2

ATTGCCATGATTGACCC

TACGGCTCCTATCGTCC

55

183

mMaCIR287

AM950526

(TG)7

10

TTTAAGAATCCCTCGCTTT

ACAGATGACGAACAAACTACC

54

203

mMaCIR289

AM950418

(GT)8,(TC)3,

3

TTGCTTCCTGTAACATCTCC

GGTCTGGGTGAAGGCA

56

205

mMaCIR294

AM950421

(AC)7,(TC)8,(CA)5,

10

CACGAGTCATAATCCAGTCA

GTTCAAAGCTCGTTGGG

55

178

mMaCIR297

AM950424

(TC)9,(AC)13,(CA)9

11

GAACTCGGATTGTTCCTTT

AGGCTGATGGTAGCGAG

55

173

mMaCIR301

AM950427

(TG)11,

6

CATGATGTTTGAGTTTGC

CTGGAAAGCAACACCG

54

166

mMaCIR305

AM950429

(CA)5,(TC)6,(GA)3,

3

CCGATCAATTCAGCCA

TATGAGCAAGAACAGCCC

55

299

mMECIR0494

pCav22

(TG)6c(GT)12

9

CCATGATACGGGCTTACGA

TCAATTACCAGCATCCTTACTT

56

266

mMECIR0496

ATPVScl3

(TA)7

4

CGCCACATAAGGCTCCCT

GTCGCCATCTCCTTGAA

55

176

mMECIR0498

SSHBSVban9a08

(GT)8nnnnn(TTC)13

6

CGGGGTCGTGTCTTAGGAA

GCAATCACACGGATACCTC

56

183

mMECIR0499

SSHBSVban9a08

(AG)8)

1

CGCTTGCCTTTGGTTGTG

CCAGTAGACGCCAATGC

56

172

mMECIR0500

SSH didier cl3

(AG)9

11

CCAGCAGACGCACACAAA

GCAACTGCAAATGAGGG

56

150

  1. Calculated primer annealing temperature (Tm) and expected product size in reference variety (i.e. M. acuminata 'Calcutta 4 and M. balbisiana "Pisang Klutuk Wulung" for mMaCIR102 to mMaCIR305 and M. acuminata 'Cavendish' for mMECIR0494 to mMECIR0500). Expected size does not take into account the M13 tail (19 bp) added to each 5'end of forward primer. LG: linkage group; Ann: Annealing temperature used.