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Table 4 Differentially regulated stress and defense response genes.

From: Tomato root transcriptome response to a nitrogen-enriched soil patch

Probe Set ID

Putative Annotation

Fold Change

(High N vs. water)

P-value

Fold Change

(Low N vs. water)

P-value

Les.2287.3.A1_at

TAS14 peptide dehydrin

-24.08

0.053

-40.75

0.078

Les.5957.1.S1_at

lactoylglutathione lyase

-6.87

0.111

-17.15

0.078

Les.293.1.S1_at

hydroxyacylglutathione hydrolase

-4.66

0.513

-4.44

0.078

Les.23.1.S1_at

glutathione S-transferase

-4.54

0.569

-3.07

0.078

Les.124.1.S1_at

glutathione transferase

-4.38

0.044

-2.54

0.107

Les.5100.1.S1_at

type I small heat shock protein

-3.85

0.044

-2.20

0.107

Les.4789.1.S1_at

pathogenesis-related protein

-3.47

0.062

-2.12

0.115

Les.5341.1.S1_at

pathogen responsive alpha-dioxygenase 2

-2.76

0.098

-1.85

0.131

Les.1645.1.A1_at

pathogenesis-related chitin-binding protein

-2.44

0.065

-1.74

0.133

Les.4004.1.S1_a_at

pathogenesis related PR5-like protein

-2.26

0.070

-1.59

0.143

Les.5098.1.S1_at

early responsive to dehydration 7-like

-2.20

0.064

-1.42

0.152

LesAffx.47187.1.S1_at

responsive to dehydration 22-like

-2.12

0.058

-1.34

0.165

Les.5103.1.S1_at

pathogenesis-related protein 1 like

-2.04

0.062

-1.33

0.168

Les.3151.1.S1_at

universal stress protein

-1.99

0.084

-1.33

0.168

Les.253.1.S1_at

pathogenesis related protein 1-like

-1.95

0.044

-1.29

0.229

Les.4910.1.S1_at

stress enhanced protein 2-like

-1.93

0.085

-1.26

0.232

Les.1498.1.S1_at

dehydration responsive

-1.87

0.096

-1.25

0.289

Les.208.1.S1_at

glutathione S-transferase

-1.72

0.062

-1.22

0.340

Les.2657.1.S1_at

rare cold inducible protein-like

-1.70

0.095

-1.20

0.377

Les.3194.1.S1_at

universal stress protein

-1.62

0.088

-1.16

0.386

Les.5128.1.S1_at

responsive to dehydration 22-like

-1.61

0.044

-1.14

0.454

Les.3276.3.S1_at

monocysteinic thioredoxin

-1.56

0.093

-1.11

0.509

Les.252.1.S1_at

wound-responsive protein-related

-1.50

0.077

-1.11

0.524

Les.54.1.S1_at

sulfiredoxin

1.10

0.044

-1.10

0.537

Les.248.2.A1_at

glutathione S-transferase

1.14

0.095

-1.08

0.796

Les.384.1.A1_at

thaumatin-like pathogenesis-related PR-5 like protein

1.42

0.070

-1.07

0.850

Les.4307.1.S1_at

early responsive to dehydration 3-like

1.47

0.053

-1.05

0.870

Les.1394.1.A1_at

heat shock factor binding protein 1

1.82

0.063

1.22

0.185

Les.3593.1.S1_at

heat shock protein

2.13

0.044

1.45

0.204

Les.2409.1.S1_at

dnaJ related molecular chaperone

2.30

0.050

1.57

0.537

LesAffx.43379.1.S1_at

dnaJ homologue 3

2.71

0.052

1.64

0.623

LesAffx.71535.1.S1_at

heat shock protein

2.81

0.077

1.72

0.639

Les.641.1.S1_at

dnaJ heat shock protein

3.01

0.067

1.95

0.746

LesAffx.66226.2.S1_at

cold-regulated plasma membrane 1 protein

3.28

0.044

1.97

0.180

Les.5158.1.S1_at

dehydration response element B1A

3.36

0.092

1.99

0.218

LesAffx.59336.1.S1_at

response to desiccation 26-like transcription factor

3.59

0.082

2.25

0.231

  1. Probe Set ID; Affymetrix identifier for each microarray probeset. Putative Annotation; functional annotation based on tomato protein function or function of Arabidopsis orthologues identified with BLAST searches. Fold Change; linear fold changes (bold values significant at False Discovery Rate (FDR) adjusted P-value < 0.10).