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Table 1 Gene Ontology terms significantly overrepresented among the differentially expressed genes comparing tissue 1 with tissue 2 (Fisher's exact test, p ≤ 0.05)

From: Large impact of the apoplast on somatic embryogenesis in Cyclamen persicum offers possibilities for improved developmental control in vitro

Comparison

Gene Ontology

Tissue 1

Tissue 2

Biological Process

Cellular Component

Molecular Function

zygotic embryo

(ID 1.3)

somatic embryo

(ID 2.1.14)

 

Chloroplast

 

embryogenic callus

(ID 2.1.1)

non-embryogenic callus

(ID 2.3.1)

response to stress, response to biotic stimulus

extracellular region

 

embryogenic tissue, 4 h after induction

(ID 2.1.11)

embryogenic tissue, 3 d after induction

(ID 2.1.12)

 

cell wall

catalytic activity

embryogenic tissue, 3 d after induction

(no torpedo-shaped embryos generated)

(ID 2.1.9)

embryogenic tissue, 3 d after induction

(torpedo-shaped embryos generated)

(ID 2.1.12)

response to abiotic stimulus

cell wall, cytosol

 

embryogenic tissue, 3 d after induction

(ID 2.1.12)

Torpedo-shaped somatic embryos,

3 weeks after induction

(ID 2.1.14)

response to abiotic stimulus

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