Analysis of a c0t-1 library enables the targeted identification of minisatellite and satellite families in Beta vulgaris

Table 1 Minisatellites and satellites identified in the c₀ t-1 library of B. vulgaris

tandem repeat	size [bp]	c₀ *t-1*hits	G/C-content [%]	identity [%]	EMBL accession	representative monomere sequence
BvMSat01	10	7	34	40 - 100	ED023089	AACTTATTGG
BvMSat11	15	1	41	36 - 100	DX580797	TAAATAGTCAAGCCC
BvMSat05	21	5	29	38 - 100	ED029002	ACTGAAAAAAAATGAAGACTA
BvMSat07	30	4	32	90 - 100	ED019743	GAAAAAATAAGTTCAGATCAGATCAGATCA
BvMSat08	32	1	48	77 - 100	DX107266	GGGTCGGAATAAATCGGCTTTCGAAATGACTT
BvMSat09	32-39	5	24	46 - 100	FN424406	AGAAGTATACAAGAACATTAATCAAAATATATAAACAAA
BvMSat03	40	3	33	55 - 100	ED024452	GTCTCTAAAGCCATGTATTTAGCGTCACATGAATTTAGTT
BvMSat10	51	3	24	78 - 100	DX980914	GTTTGTTCTTAAAAGGTTGTTCTTGAATTATTATTCAAGTGTTTGGAAAGA
BvMSat04	96	2	41	70 - 100	DX983375	CCTCTAAATGTAAGTGGCTTTAGCAGCACTATAAGTTCTGTGCCTAAAAAA
						GGTGGCATTACGGGCAACCAACAATTAGCGACAGGCATATGGTTG
FokI-satellite	130	1	60	81 - 100	DX979624	GGGACTTAGGAGAGTGACCCAACCAAGGAGGGAGACCTCCTTGGGCTGAGT
						TGGGTGGACGCGGCTCGGATGAGGGGCCAATGAGCCCCACGCTTGTCCGAG
						CCGGTGCCGTCTCTCGCCATGTCAATCT
AluI-satellite	173	1	33	78 - 100	ED022281	ATAATCATACCTCTATGCCTATTCCAAGTTCTAATGGCTAATGCAAGTCCT
						AAAATACTCATTTAAACTTTCTACTACATGGTTGTAAGATTCTAAGCAAGT
						TTAATACACTTAGCCAATTAAAATGAGAAAAACTAAGCCATTTCGAGCCGT
						TTTTTGGGTTTCATGTTCCT
HinfI-satellite	325	2	45	75 - 86	DX982322	TGTGACTTGTAACATTGCGCGGGTGCTTGGCACCATTTGCGTTACCTCAAA
						AAGCCTTTGAACACCCCAATTATTCATTTCTCGCGAAATCCAAAATTGCCT
						CGAAATGAACGTAAAGGCATCCACATATTTGTTCCAAGCCACATGACTCCT
						TTACATTGACCTCCTATGTCCCTAGGAGGCATCCCGTGCCATTTGGAGCTC
						GGGCAACGGGAAAGTCCGAAAGCGTGTATAATCTTCAATTTTAGTTGTTTT
						TGGGGAATTTTTGGACTACTTCTTCAGGCCCGGTCATATTTTTCTTTCGAA
						ACATTCCTAGGAGTGCCGA

ISSN: 1471-2229