Domain | Total number of sites aligned | Number of polymorphic sites | Average number of polymorphic sites per 100 bp | Nucleotide diversity (Ï€) | Number of synonymous substitutions (Ks) | Number of non-synonymous substitutions (Ka) | Ka/Ksratio |
---|---|---|---|---|---|---|---|
Hexaploid | Â | Â | Â | Â | Â | Â | Â |
Pm3 genes (excluding intron) | 4242 | 299 | 7.03 | 0.01008 | 103 | 252 | 2.44 |
CC | 474 | 0 | 0.00 | 0.00000 | 0 | 0 | - |
NBS | 1062 | 80 | 7.51 | 0.00742 | 37 | 47 | 1.27 |
Interspacer | 198 | 37 | 18.4 | 0.0379 | 12 | 28 | 2.33 |
LRR | 2508 | 182 | 7.25 | 0.0109 | 54 | 177 | 3.27 |
Tetraploid | Â | Â | Â | Â | Â | Â | Â |
Pm3 genes (excluding intron) | 4242 | 185 | 4.36 | 0.01113 | 43 | 147 | 3.41 |
CC | 474 | 3 | 0.63 | 0.00086 | 1 | 2 | 2 |
NBS | 1062 | 4 | 0.37 | 0.00045 | 1 | 3 | 3 |
Interspacer | 198 | 31 | 15.65 | 0.02598 | 9 | 22 | 2.44 |
LRR | 2508 | 147 | 5.86 | 0.01643 | 32 | 120 | 3.75 |
Hexaploid and tetraploid | Â | Â | Â | Â | |||
Pm3 genes (excluding intron) | 4242 | 356 | 8.38 | 0.01311 | 121 | 311 | 2.57 |
CC | 474 | 3 | 0.63 | 0.00038 | 1 | 2 | 2.00 |
NBS | 1062 | 84 | 7.90 | 0.00451 | 38 | 50 | 1.31 |
Interspacer | 198 | 43 | 21.39 | 0.03273 | 16 | 38 | 2.37 |
LRR | 2508 | 226 | 9.02 | 0.01761 | 66 | 221 | 3.34 |