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Table 1 The numbers of transcript derived fragments (TDFs) in some of the biological function categories showing up- or down- regulated expression pattern in wheat (cv. Suwon 11) leaves inoculated with Puccinia striiformis f. sp. tritici (pathotype CYR23)

From: Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction

   

Expression pattern (% in category)

Function group

Number

Percentage (%)

Up (%)

Down (%)

1. Sequenced

255

10.5

187 (73.3)

68 (26.7)

   Metabolism

11

4.3

8 (72.7)

3 (27.3)

   Energy

34

13.3

26 (76.5)

8 (23.5)

   Cell growth/division

3

1.2

2 (66.7)

1 (33.3)

   Transcription

12

4.7

11 (91.7)

1 (8.3)

   Protein synthesis

3

1.2

3

0

   Protein destination and storage

6

2.4

3 (50.0)

3 (50.0)

   Transporters

6

2.4

5 (83.3)

1 (16.7)

   Intracellular traffic

1

0.4

1

0

   Cell structure

2

0.8

2

0

   Signal transduction

17

6.7

14 (82.4)

3 (17.6)

   Disease/defense

18

7.1

15 (83.3)

3 (16.7)

   Unclassified

107

42.0

72 (67.3)

35 (32.7)

   Unclear classification

35

13.7

25 (71.4)

10 (28.6)

2. Unsequenced

2,182

89.5

1,600 (73.3)

582 (26.7)

Total

2,437

100.0

1,787 (73.3)

650 (26.7)