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Table 1 Characteristics of eight BACs sequenced from white clover, representing four homoeologous regions

From: Comparison of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species

Region

BAC identity

Gene used to identify

Sub-genome

HGa

Assembly phase

Length (kb)

Overlap length (kb)b

Gene incidence (bp)

% BAC composed of gene spacec

A

wc38j22

TrZPT2

O

3

2

61

51

6100

45.20

A

wc11l07

TrZPT2

P'

3

3

127

 

11545

23.05

B

wc113f04

TrDREB3

O

4

2

73

51

12166

28.34

B

wc88n22

TrDREB3

P'

4

3

101

 

10100

28.05

C

wc99k01

TrDHNb

O

3

3

152

50

8941

29.80

C

wc32k23

TrDHNb

P'

3

2

50

 

10000

23.47

D

wc88b23

TrANR

O

4

1

25

21

8333

36.77

D

wc36e03

TrANR

P'

4

1

24

 

6000

24.55

Average

       

9148

29.90

  1. a. Homoeologous group
  2. b. Regions of homoeologous BAC overlap were determined based on alignment of the gene used to identify the BAC.
  3. c. Gene space is defined as all nucleotides between the start and stop codon of the open reading frame and including all exons and introns.