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Table 2 Motifs overrepresented in the promoters of the CRK family.

From: Transcriptional regulation of the CRK/DUF26 group of Receptor-like protein kinases by ozone and plant hormones in Arabidopsis

Promoter motifs

Promoter motifs

     

Number

Subset

Region

Motif

q-value

Motif name

1

CRKs O3 up

500 bp

TTGAC(+)

0.05

W-box

2

CRKs all

500 bp

TTGAC(+/-)

0.05

W-box

3

CRKs all

500 bp

TTGAC(+)

0.01

W-box

4

CRKs all

500 bp

TTGAC(-)

0.01

W-box

5

CRKs O3 up up

500 bp

ACACNNG(+/-) × TTGAC(+)

0.00

DPBF1&2 × W-box

6

CRKs O3 up

500 bp

ACACNNG(-) × ACTTTG(+)

0.05

DPBF1&2 × T-box

7

CRKs O3 up

500 bp

ACACNNG(-) × TTGAC(+)

0.05

DPBF1&2 × W-box

8

CRKs O3 up

500 bp

A [AC]C [AT]A [AC]C(-) × TTGAC(+)

0.05

MYB4 × W-box

9

CRKs O3 up

500 bp

CAACA(-) × TTGAC(+)

0.05

RAV1-A × W-box

10

CRKs O3 up

500 bp

CAACA(-) × TTGAC(-)

0.05

RAV1-A × W-box

11

CRKs O3 up

500 bp

ACACNNG(-) × A [AC]C [AT]A [AC]C(-)

0.05

DPBF1&2 × MYB4

12

CRKs O3 up

500 bp

ACACNNG(-) × TTGAC(-)

0.05

DPBF1&2 × W-box

13

CRKs O3 up

500 bp

A [AC]C [AT]A [AC]C(-) × TTGAC(-)

0.05

MYB4 × W-box

14

CRKs all

500 bp

ACACNNG(+/-) × TTGAC(+)

0.03

DPBF1&2 × W-box

15

CRKs alll

500 bp

ACTTTG(+/-) × TTGAC(-)

0.04

T-box × W-box

16

CRKs all

500 bp

ACACNNG(-) × TTGAC(+)

0.05

DPBF1&2 × W-box

17

CRKs all

500 bp

GATAAG(-) × AAATTAGT(+)

0.05

Ibox × BS2

18

CRKs all

500 bp

CAACA(-) × TTGAC(+)

0.05

RAV1-A × W-box

19

CRKs all

500 bp

CAACA(-) × TTGAC(-)

0.01

RAV1-A × W-box

20

CRKs all

500 bp

ACACNNG(-) × TTGAC(-)

0.03

DPBF1&2 × W-box

21

CRKs all

500 bp

GATAAG(-) × ACTAATTT(-)

0.03

Ibox × BS3

22

CRKs all

500 bp

A [AC]C [AT]A [AC]C(-) × TTGAC(-)

0.03

MAB4 × W-box

  1. The promoters of the CRK family were analyzed for enrichment of Arabidopsis verified promoter elements. Enrichment was calculated for single and double motifs in both plus and minus orientation. The CRKs were divided into three groups for the analysis: "CRKs all", "CRKs O3 up" - O3 increased expression and "CRKs O3 down" - O3decreased expression. (+) motif on forward strand, (-) motif on reverse strand, (+/-) motif on either forward or reverse strand. The CRKs containing the respective motifs are shown in additional file