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Table 1 Transposable element Annotation of Chromosome 3B ctg1034

From: A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

Class

Order

Family

Code

Elements

Complete TSD

Nested

Length (bp)

% TEs

% Contig

Class I

(Retrotransposable elements)

         
 

LINE

Unknown

RIX

1

 

1

2962

0.46%

0.38%

 

LTR

Copia

RLC

9

9

1

93966

14.66%

11.99%

  

Gypsy

RLG

55

39

19

401485

62.64%

51.24%

  

Unknown

RLX

6

3

2

29915

4.67%

3.82%

Total

   

71

51

23

528328

82.42%

67.43%

Class II (DNA Transposons)

TIR

CACTA

DTC

9

5

5

100864

15.74%

12.87%

  

Harbinger

DTH

1

  

1838

0.29%

0.23%

  

Mutator

DTM

1

  

802

0.13%

0.10%

  

Tc1- mariner

DTT

1

  

693

0.11%

0.09%

 

Unknown

 

DXX

1

  

730

0.11%

0.09%

Total

   

13

5

5

104927

16.37%

13.39%

Unknown

  

XXX

2

  

7733

1.21%

0.99%

Total Transposable elements

   

86

56

28

640988

 

81.81%