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Table 1 52 genes are identified as maternally expressed by GenFrag analysis of cDNA-AFLP TDFs sizes and the selective nucleotides of the primer combinations used to generate the TDFs.

From: Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thalianaseeds

Gene

Protein encoded

At1g03070

Glutamate binding protein

At1g04700

Protein kinase family protein

At1g09390

GDSL-motif lipase/hydrolase family protein

At1g12420

ACT Domain Repeat 8 (ACR8)

At1g14880

Unknown protein

At1g16730

Unknown protein

At1g17840

ABC transporter family protein

At1g31820

Amino acid permease family protein

At1g54710

AtATG18

At1g55320

Ligase, similar to acyl-activating enzyme 17 (AAE17)

At1g61990

Mitochondrial transcription termination factor-related

At1g65820

Microsomal glutathione s-transferase, putative

At1g73680

Pathogen-responsive alpha-dioxygenase

At1g74450

Unknown protein

At1g75680

Arabidopsis thaliana glycosyl hydrolase 9B7 (ATGH9B7)

At2g16480

Unknown protein

At2g21130

Cyclophilin-like

At2g26620

Glycoside hydrolase family 28 protein

At2g31510

ARIADNE-like protein ARI7 (ARI7)

At2g32000

DNA topoisomerase family protein

At2g36020

Abscisic acid-responsive HVA22 family protein

At2g40810

Arabidopsis thaliana homolog of yeast autophagy 18c (ATG18c)

At2g45315

Unknown

At3g09840

Cell division cycle 48 (ATCDC48)

At3g12370

Mitochondrial RPL10

At3g20760

Nse4, component of Smc5/6 DNA repair complex

At3g22260

Ovarian tumor domain-like cysteine protease family protein

At3g24780

Uncharacterised conserved protein

At3g25530

Gamma-hydroxybutyrate dehydrogenase (ATGHBDH)

At3g29360

UDP-glucose 6-dehydrogenase

At3g47250

Unknown protein

At3g51280

Similar to male sterility MS5

At3g55250

Similar to calcium homeostasis regulator (CHoR1)

At3g57510

Arabidopsis endo-polygalacturonase 1 (ADPG1)

At3g59380

FARNESYLTRANSFERASE A (FTA)

At4g00180

YABBY gene family member

At4g01000

Ubiquitin family protein

At4g16830

Nuclear RNA-binding protein (RGGA)

At4g21270

AT KINESIN 1

At4g29450

Leucine-rich repeat protein kinase, putative

At4g33450

Myb domain protein 69 (AtMYB69)

At4g37530

Peroxidase, putative

At5g04895

ATP binding/helicase/nucleic acid binding protein

At5g16620

Pigment defective embryo (PDE120) chloroplast import (Tic40)

At5g17080

Cathepsin-related protein

At5g35730

EXS family protein/ERD1/XPR1/SYG1 family protein

At5g35737

Unknown protein

At5g38320

Unknown protein

At5g39510

VESICLE TRANSPORT V-SNARE 11 (VTI11)

At5g40390

Seed imbibition 1 (SIP1)

At5g61300

Unknown protein

At5g56310

ATHB5

  1. 52 maternally-expressed genes were identified from transcript-derived fragments generated by cDNA-AFLP of hybrid A. thaliana siliques. 93 TDFs were identified using GenFrag on the basis of their size and the selective nucleotides of the primer combinations used to generate them. These were matched to the 52 genes listed by BLASTN against A. thaliana genome (TAIR v.8). Nine genes which have been reported as preferentially endosperm-enriched (Day et al., 2008) are marked in bold.