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Table 1 Overview of the identified MYB and MYC binding sites in the 5'-TRY minimal promoter identified by PLACE database

From: Role of TRIPTYCHON in trichome patterning in Arabidopsis

 

5'-TRY-

nucleotide

sequence

Position relative

to the ATG

(start/end)

Name of the described cis-element

Putative

cis-element nucleotide sequence

Description of the putative cis-element

MYB1

GTTTGGTG

-544/-551

MYBPLANT

MACCWAMC

Binding of AmMYB305 in Antirrhinum majus to box P from gPAL2 of Phaseolus vulgaris; P box related sequences [48, 49] are identified in several promoters of phenylpropanoid biosynthesis related genes (PAL, CHS, CHI, DFR, BZ1) in different plants (Phaseolus vulgaris, Antirrhinum majus, Petunia hybrida, Petroselinum crispum, Arabidopsis thaliana, Zea mays) [50]

MYB2

CCAACC

-531/-536

MYBPZM

CCWACC

Binding in promoters of A1 and BZ1 genes of phlobaphene pigmentation and flavonoid biosynthesis in Zea mays (factors, e.g. C1, P) [51]

MYB3

TTTGTTA

-607/-613

MYBGAHV

TAACAAA

Central element of the gibberellin (GA) response complex (GARC) in the high-pI alpha-amylase gene in Hordeum vulgare, binding of GaMYB [52–54].

MYB4

CCGTT

-153/-157

MYBCOREATCYCB1

AACGG

"Myb core" found in the promoter of Arabidopsis thaliana cyclin B1:1 gene [55].

 

GCCGTTCGT

-150/-158

v-MYB*

NSYAACGGN

Binding site of the v-MYB oncocgene of the avian myeloblastosis virus [56].

 

GGCCGTTCGT

-150/-159

c-MYB*

NNNAACKGNC

Binding site of the c-MYB, the cellular homolog of v-MYB

MYB5

TTGAACTTGC

-404/-413

c-MYB*

NNNAACKGNC

Binding site of the c-MYB, the cellular homolog of v-MYB

MYC1

CATCTG

-399/-404

MYC

CONSENSUSAT

CANNTG

Binding of AtMYC2 in pAtRD22 (dehydration responsive gene) in Arabidopsis thaliana.

MYC2

CATGTG

-243/-248

MYC

CONSENSUSAT

CANNTG

Binding of AtMYC2 in pAtRD22 (dehydration responsive gene) in Arabidopsis thaliana [48, 49].

   

MYCATERD1

CATGTG

Binding of AtNAC to the ERD1 gene (early responsive to dehydration) in dehydrated Arabidopsis thaliana [57, 58].

   

MYCATRD22

CACATG

Binding of AtMYC2 to the RD22 gene (dehydration responsive gene) ) in Arabidopsis thaliana [49].

  1. An additional analysis marked by "*" was done by the TRANSFAC database.