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Table 3 BlastN comparisons of the five line-specific assemblies generated with CAP3 and the Sce_Assembly03.

From: From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)

 

Query

 

Line-specific assembly

Sce_Assembly03

Subject

Lo7

Lo152

Lo225

P87

P105

Multi-line contigs

Single-line contigs

Line-specific assembly

       

   Lo7

 

52.2

56.1

61.8

56.9

76.1

35.5

   Lo152

67.7

 

54.3

59.6

56.0

77.1

49.5

   Lo225

77.6

58.3

 

68.7

63.8

84.2

53.5

   P87

74.4

55.4

59.9

 

60.9

82.8

40.6

   P105

78.7

59.5

63.8

70.2

 

87.8

47.5

Sce_Assembly03

       

   Multi-line contigs

85.2

64.4

69.6

78.0

72.3

 

35.3

   Single-line contigs

59.1

64.4

67.3

59.2

62.4

58.5

 
  1. Values show percent hits of query sequences counting the first best hit in each comparison.