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Table 3 BlastN comparisons of the five line-specific assemblies generated with CAP3 and the Sce_Assembly03.

From: From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)

  Query
  Line-specific assembly Sce_Assembly03
Subject Lo7 Lo152 Lo225 P87 P105 Multi-line contigs Single-line contigs
Line-specific assembly        
   Lo7   52.2 56.1 61.8 56.9 76.1 35.5
   Lo152 67.7   54.3 59.6 56.0 77.1 49.5
   Lo225 77.6 58.3   68.7 63.8 84.2 53.5
   P87 74.4 55.4 59.9   60.9 82.8 40.6
   P105 78.7 59.5 63.8 70.2   87.8 47.5
Sce_Assembly03        
   Multi-line contigs 85.2 64.4 69.6 78.0 72.3   35.3
   Single-line contigs 59.1 64.4 67.3 59.2 62.4 58.5  
  1. Values show percent hits of query sequences counting the first best hit in each comparison.