Table 1 Subset of SND1-regulated genes [28] also significantly differentially expressed in stems of eight-week-old SND2-OV(A) plants relative to wild type (SND2∩Ko).

   AT4G28500

ANAC073/SND2 (Arabidopsis NAC domain containing protein 73); transcription factor

> 100.00^c

0.00E+00

   AT1G63910

MYB103 (MYB DOMAIN PROTEIN 103); DNA binding/transcription factor

1.83

1.13E-11

   AT1G52890

ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor

1.44

3.07E-04

   AT1G32770

ANAC012/NST3/SND1 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12); transcription factor

1.42

6.93E-04

   AT4G17245

Zinc finger (C3HC4-type RING finger) family protein

1.36

4.97E-03

   AT5G13330

RAP2.6L (related to AP2 6L); DNA binding/transcription factor

1.36

4.87E-03

Secondary cell wall biosynthesis and cell wall modification

   AT2G03090

EXPA15 (EXPANSIN A15)

2.03

3.60E-16

   AT5G44030

CESA4 (CELLULOSE SYNTHASE 4); transferase, transferring glycosyl groups

1.84

7.91E-12

   AT5G60490

FLA12 (fasciclin-like arabinogalactan-protein 12)

1.83

1.37E-11

   AT2G38080

IRX12/LAC4 (laccase 4); copper ion binding/oxidoreductase

1.77

2.51E-10

   AT5G17420

CesA7/IRX3 (IRREGULAR XYLEM 3, MURUS 10); cellulose synthase

1.73

1.25E-09

   AT5G03170

FLA11 (fasciclin-like arabinogalactan-protein 11)

1.72

2.80E-09

   AT5G03760

CSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4); transferase, transferring glycosyl groups

1.66

4.33E-08

   AT4G18780

CESA8 (CELLULOSE SYNTHASE 8); cellulose synthase/transferase, transferring glycosyl groups

1.63

1.33E-07

   AT5G15630

COBL4/IRX6 (COBRA-LIKE4)

1.62

2.12E-07

   AT5G60020

LAC17 (laccase 17); copper ion binding/oxidoreductase

1.59

7.44E-07

   AT3G18660

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1); transferase, transferring glycosyl groups

1.58

1.21E-06

   AT3G50220

IRX15; domain of unknown function 579 (DUF579)-containing protein

1.55

3.97E-06

   AT5G54690

GAUT12/IRX8/LGT6 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase

1.39

1.81E-03

   AT5G59290

UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE)

1.38

2.66E-03

   AT1G19300

GATL1/GLZ1/PARVUS (GALACTURONOSYLTRANSFERASE-LIKE 1); polygalacturonate 4-alpha-galacturonosyltransferase

1.33

1.08E-02

   AT5G01360

TBL3; domain of unknown function 231 (DUF231)-containing protein

1.31

2.08E-02

   AT1G27440

GUT2/IRX10 (glucuronoxylan glucuronosyltransferase)

1.30

2.57E-02

Signal transduction

   AT3G16920

CTL2 (Chitinase -like protein 2)

1.71

4.23E-09

   AT1G09440

Protein kinase family protein

1.47

1.21E-04

   AT3G15050

IQD10 (IQ-domain 10); calmodulin binding

1.46

1.68E-04

   AT1G27380

RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)

1.43

4.07E-04

   AT1G56720

Protein kinase family protein

1.41

9.28E-04

   AT1G08340

Rho GTPase activating protein, putative

1.38

2.29E-03

   AT2G36570

Leucine-rich repeat transmembrane protein kinase, putative

1.32

1.47E-02

Carbohydrate metabolism

   AT5G35740

Glycosyl hydrolase family protein 17

1.57

2.54E-06

   AT1G04680

Pectate lyase family protein

1.57

2.11E-06

   AT4G36360

BGAL3 (beta-galactosidase 3); beta-galactosidase

1.45

2.66E-04

   AT1G19940

GH9B5 (GLYCOSYL HYDROLASE 9B5); hydrolase, hydrolyzing O-glycosyl compounds

1.41

1.09E-03

Abiotic and biotic stress response

   AT5G42180

Peroxidase 64 (PER64) (P64) (PRXR4)

1.66

4.29E-08

   AT1G72060

Serine-type endopeptidase inhibitor

1.52

1.59E-05

   AT4G27410

RD26 (RESPONSIVE TO DESSICATION 26)

1.37

3.20E-03

   AT2G37130

Peroxidase 21 (PER21) (P21) (PRXR5)

1.29

3.47E-02

   AT4G23690

Disease resistance-responsive family protein/dirigent family protein

-1.34

7.80E-03

   AT1G68850

Peroxidase, putative

-1.41

1.08E-03

   AT4G11650

OSM34 (OSMOTIN 34)

-1.69

8.89E-09

   AT5G24780

VSP1 (VEGETATIVE STORAGE PROTEIN 1); acid phosphatase

-2.38

3.08E-24

Cytoskeleton

   AT1G50010

TUA2 (tubulin alpha-2 chain)

1.47

1.26E-04

   AT5G23860

TUB8 (tubulin beta-8)

1.36

4.58E-03

One-carbon metabolism

   AT3G23810

SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase

1.41

9.68E-04

Lipid metabolism

   AT1G29670

GDSL-motif lipase/hydrolase family protein

1.28

4.39E-02

   AT1G21360

GLTP2 (GLYCOLIPID TRANSFER PROTEIN 2)

-1.77

1.99E-10

Wax biosynthesis

   AT1G02205

CER1 (ECERIFERUM 1)

1.35

2.04E-03

Unknown function

   AT3G22540

Unknown protein

1.58

1.50E-06

   AT1G33800

Unknown protein

1.55

4.24E-06

   AT4G27435

Unknown protein

1.43

5.42E-04

   AT5G64190

Unknown protein

1.42

6.86E-04

   AT5G61340

Unknown protein

1.39

1.63E-03

   AT1G07120

Unknown protein

1.32

1.47E-02

   AT1G03820

Unknown protein

1.32

1.88E-02

   AT1G24600

Unknown protein

-1.33

1.29E-02

   AT5G66170

Unknown protein

-1.36

4.29E-03

Unassigned

   AT1G55330

AGP21 (ARABINOGALACTAN PROTEIN 21)

1.71

4.63E-09

   AT4G28050

TET7 (TETRASPANIN7)

1.64

1.16E-07

   AT3G54040

Photoassimilate-responsive protein-related

1.62

2.52E-07

   AT2G41250

Haloacid dehalogenase-like hydrolase superfamily protein

1.57

2.23E-06

   AT5G44130

FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)

1.44

3.97E-04

   AT2G05540

Glycine-rich protein

1.43

4.36E-04

   AT3G62020

GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding/metal ion binding/nutrient reservoir

1.40

1.46E-03

   AT5G10430

AGP4 (ARABINOGALACTAN-PROTEIN 4)

1.38

2.29E-03

   AT3G52370

FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)

1.37

4.03E-03

   AT2G05380

GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)

1.37

3.58E-03

   AT2G22170

Lipid-associated family protein

1.35

7.62E-03

   AT1G72230

Plastocyanin-like domain-containing protein

1.32

1.70E-02

   AT4G04460

Aspartyl protease family protein

-1.29

4.11E-02

   AT1G76790

O-methyltransferase family 2 protein

-1.39

1.94E-03

   AT3G28220

Meprin and TRAF homology domain-containing protein/MATH domain-containing protein

-1.60

5.82E-07

   AT4G25010

Nodulin MtN3 family protein

-1.64

1.00E-07

   AT2G39030

GCN5-related N-acetyltransferase (GNAT) family protein

-1.80

4.90E-11

   AT5G09530

Hydroxyproline-rich glycoprotein family protein

-3.09

1.31E-41