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Table 2 Genes tightly co-expressed with endogenous SND2 transcript.

From: SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus

Co-expressed gene

R-value

Description

SND2∩Ko

PGSIP1 (AT3G18660)

0.980

Plant glycogenin-like starch initiation protein 1

√

IQD10 (AT3G15050)

0.979

Calmodulin-binding protein

√

MYB103 (AT1G63910)

0.973

Secondary cell wall-associated transcription factor

√

IRX8 (AT5G54690)

0.972

Galacturonosyltransferase 12

√

COBL4 (AT5G15630)

0.972

COBRA-like protein

√

IRX15 (AT3G50220)

0.967

DUF579 protein required for normal xylan synthesis

√

IRX15-L (AT5G67210)

0.963

DUF579 protein required for normal xylan synthesis

 

CesA7 (AT5G17420)

0.962

Secondary cell wall cellulose synthase protein

√

GLP10 (AT3G62020)

0.959

Germin-like protein 10

√

FLA11 (AT5G03170)

0.958

Fasciclin-like arabinogalactan protein

√

LAC4 (AT2G38080)

0.955

IRREGULAR XYLEM 12

√

LAC2 (AT2G29130)

0.953

Laccase

 

AT1G08340

0.952

Rho GTPase activating protein

√

CTL2 (AT3G16920)

0.951

Chitinase-like protein 2

√

AT1G80170

0.950

Pectin lyase-like superfamily protein

 

AT2G41610

0.950

Unknown protein

 

SND1 (AT1G32770)

0.948

Secondary cell wall-associated transcription factor

√

RIC2 (AT1G27380)

0.948

ROP-interactive CRIB motif-containing protein

√

MAP65-8 (AT1G27920)

0.941

Microtubule-associated protein

 

AT1G07120

0.938

Unknown protein

√

AT2G31930

0.936

Unknown protein

 

CesA4 (AT5G44030)

0.934

Secondary cell wall cellulose synthase protein

√

AT4G27435

0.934

Protein of unknown function (DUF1218)

√

AT1G22480

0.933

Cupredoxin superfamily protein

 

IRX10 (AT1G27440)

0.929

Glucuronoxylan glucuronosyltransferase

√

CesA8 (AT4G18780)

0.926

Secondary cell wall cellulose synthase protein

√

RWA3 (AT2G34410)

0.915

Polysaccharide O-acetyltransferase

 

AT4G28380

0.915

Leucine-rich repeat (LRR) family protein

 

LAC17 (AT5G60020)

0.914

Laccase

√

PARVUS (AT1G19300)

0.904

Polygalacturonate 4-α-galacturonosyltransferase

√

TBL3 (AT5G01360)

0.902

DUF231 protein involved in cellulose biosynthesis

√

  1. Expression Angler [41] was used to find co-expressed genes in the AtGenExpress Plus Extended Tissue Set microarray data. The R-value represents the Pearson correlation coefficient of co-expression, set to a threshold of R > 0.90. Co-expressed genes that were also differentially expressed in the SND2∩Ko subset of SND2 overexpression data (Table 1) are indicated in the far right column.
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BMC Plant Biology

ISSN: 1471-2229

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