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Table 3 Codon usage in S. indicum

From: Analysis of expression sequence tags from a full-length-enriched cDNA library of developing sesame seeds (Sesamum indicum)

  

Second Letter

  
  

U

C

A

G

  

First Letter

U

Phe

UUU

208

0.82

Ser

UCU

224

1.27

Tyr

UAU

192

0.67

Cys

UGU

113

0.9

U

Third Letter

  

Phe

UUC

301

1.18

Ser

UCC

259

1.47

Tyr

UAC

385

1.33

Cys

UGC

137

1.1

C

 
  

Leu

UUA

202

1.04

Ser

UCA

173

0.98

TER

UAA

49

1.20

TER

UGA

70

1.72

A

 
  

Leu

UUG

298

1.53

Ser

UCG

108

0.61

TER

UAG

3

0.07

Trp

UGG

95

1

G

 
 

C

Leu

CUU

192

0.99

Pro

CCU

151

0.87

His

CAU

151

1

Arg

CGU

231

1.63

U

 
  

Leu

CUC

216

1.11

Pro

CCC

165

0.96

His

CAC

150

1

Arg

CGC

180

1.27

C

 
  

Leu

CUA

70

0.36

Pro

CCA

275

1.59

Gln

CAA

280

1.05

Arg

CGA

48

0.34

A

 
  

Leu

CUG

190

0.98

Pro

CCG

100

0.58

Gln

CAG

254

0.95

Arg

CGG

72

0.51

G

 
 

A

Ile

AUU

399

1.27

Thr

ACU

357

1.55

Asn

AAU

261

0.97

Ser

AGU

121

0.68

U

 
  

Ile

AUC

420

1.33

Thr

ACC

275

1.19

Asn

AAC

275

1.03

Ser

AGC

175

0.99

C

 
  

Ile

AUA

126

0.4

Thr

ACA

212

0.92

Lys

AAA

520

0.99

Arg

AGA

222

1.57

A

 
  

Met

AUG

375

1

Thr

ACG

77

0.33

Lys

AAG

529

1.01

Arg

AGG

96

0.68

G

 
 

G

Val

GUU

331

1.39

Ala

GCU

396

1.51

Asp

GAU

412

1.13

Gly

GGU

402

1.54

U

 
  

Val

GUC

281

1.18

Ala

GCC

280

1.07

Asp

GAC

315

0.87

Gly

GGC

227

0.87

C

 
  

Val

GUA

161

0.68

Ala

GCA

247

0.94

Glu

GAA

532

1.16

Gly

GGA

333

1.28

A

 
  

Val

GUG

181

0.76

Ala

GCG

123

0.47

Glu

GAG

387

0.84

Gly

GGG

79

0.3

G

 
  1. Codon usage was calculated from 122 ORFs containing 14,669 codons.