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Table 5 Frequency of non-redundant uniESTs-derived SSR motifs

From: Analysis of expression sequence tags from a full-length-enriched cDNA library of developing sesame seeds (Sesamum indicum)

Repeats

4

5

6

7

8

9

10

11

12

13

14

15

> 15

total

AC/GT

-

-

36

15

11

9

6

2

1

    

80

AG/CT

-

-

99

54

35

25

23

15

6

5

6

2

5

275

AT/AT

-

-

28

9

7

3

       

47

CG/CG

-

-

1

          

1

AAC/GTT

217

40

13

3

    

1

    

274

AAG/CTT

240

31

9

4

1

3

 

3

1

3

1

 

2

298

AAT/ATT

74

13

2

1

         

90

ACC/GGT

134

22

13

4

4

1

       

178

ACG/CTG

77

32

3

7

2

 

1

      

122

ACT/ATG

53

8

6

8

         

75

AGC/CGT

108

18

12

3

8

1

       

150

AGG/CCT

91

22

3

 

1

1

       

118

AGT/ATC

31

18

3

  

2

3

     

1

58

CCG/CGG

53

23

3

 

1

        

80

AAAG/CTTT

5

1

1

1

         

8

AAAT/ATTT

6

            

6

AACC/GGTT

8

            

8

AACG/CTTG

1

1

 

1

         

3

AACT/ATTG

1

            

1

AAGC/CGTT

  

1

          

1

AAGG/CCTT

 

5

           

5

AAGT/ATTC

12

            

12

AATC/AGTT

1

            

1

AATT/AATT

1

            

1

ACAG/CTGT

5

 

1

          

6

ACAT/ATGT

2

 

5

          

7

ACGC/CGTG

3

            

3

ACGT/ATGC

1

            

1

ACTC/AGTG

4

2

2

          

8

ACTG/ACTG

 

2

           

2

AGAT/ATCT

2

            

2

AGCC/CGGT

  

1

1

         

2

AGGT/ATCC

6

2

1

1

         

10

AGTC/AGTC

2

            

2

AGAGG/CCTCT

-

 

5

          

5

AGGGT/ATCCC

-

2

           

2

AACAAG/CTTGTT

-

 

1

          

1

AAGTAG/ATCTTC

-

1

1

          

2

ACCGAG/CTCTGG

-

           

1

1

AGCTCC/AGGTCG

-

1

           

1

  1. Non-redundant SSR motifs were derived from 32,421 uniESTs.