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Table 4 OrthoMCL analysis of C. arabica and C. canephora, highlighting prominent and specific families in Coffea spp

From: An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

OrthoMCL family ID

Coffea arabica

Coffea canephora

Vitis Vinifera

Solanum lycopersicum

Glycine max

Ricinus communis

Oryza sativa

Arabidopsis thaliana

Manual Annotation*

1

446

189

1402

808

2532

1378

813

847

Serine-threonine kinase

2

152

51

580

212

967

461

478

447

PPR repeat protein

6

84

41

193

123

226

99

101

108

Cytochrome P450

544

21

6

1

-

-

-

-

-

Cystatin

453

14

4

1

7

3

1

1

1

NBS LRR resistance protein

1231

13

5

-

-

-

-

-

-

Small secreted glycine-rich protein

4031

10

-

-

-

-

-

-

-

Glycine-rich protein

1510

7

1

1

-

2

1

1

3

UDP-glucosyltransferase

2703

6

3

-

1

1

-

1

-

Cysteine proteinase inhibitor like protein

3289

6

-

1

-

2

-

2

-

NBS LRR resistance protein

5056

6

1

-

1

-

-

-

-

Alcohol dehydrogenase

2306

5

1

-

2

1

1

2

-

Cytochrome P450

2722

5

1

-

1

1

2

1

1

NBS LRR resistance protein

3294

5

-

1

-

3

-

1

1

Poly-A binding protein

3303

5

1

2

1

-

-

-

1

NADPH-dependent cinnamyl alcohol dehydrogenase

3305

5

2

1

2

-

-

-

-

Specific tissue protein 2

4049

5

2

1

1

-

-

1

-

Sugar transport protein

4070

5

-

1

1

3

-

-

-

Cytochrome P450

7241

5

1

1

-

-

-

1

-

Potato type II serine proteinase inhibitor family

10956

5

-

-

-

-

-

-

-

Hypothetical protein

7610

4

1

-

1

-

-

-

1

Ubiquitin-conjugating enzyme

7611

4

1

-

1

1

-

-

-

P-glycoprotein ABC

7613

4

-

-

2

1

-

-

-

Hexose transporter

9014

4

1

-

-

-

1

-

-

GH3 family protein/Indole-3-acetic acid-amido synthetase

10273

4

1

-

-

-

-

-

-

Potato type II serine proteinase inhibitor family

11588

4

-

-

-

-

-

-

-

Small secreted glycine-rich protein

11617

4

-

-

-

-

-

-

-

Hypothetical protein

12384

4

-

-

-

-

-

-

-

Hypothetical protein

12385

4

-

-

-

-

-

-

-

Defensin/gamma thionin

12386

4

-

-

-

-

-

-

-

Hypothetical protein

7324

3

2

-

-

2

-

-

-

Helix-loop-helix DNA-binding protein

9019

3

-

-

1

-

1

-

-

Zinc/iron transporter

9830

3

-

3

-

-

-

-

-

Eukaryotic initiation factor (eIF1)/SU1

10271

3

1

-

-

-

-

1

-

Metallothionein

10276

3

-

-

-

-

1

-

1

SEC14 cytosolic factor family protein

10293

3

-

-

1

1

-

-

-

ABC transporter

10300

3

1

-

-

1

-

-

-

Phytochrome B/histidine kinase

10309

3

1

-

1

-

-

-

-

Oxidoreductase

11058

3

-

1

1

-

-

-

-

ATP-binding cassette transporter

11594

3

-

-

-

-

-

-

1

A. thaliana-related cystatin

11600

3

-

-

-

-

-

1

-

Alcohol dehydrogenase

11607

3

1

-

-

-

-

-

-

CAAX amino-terminal protease

11626

3

1

-

-

-

-

-

-

Hypothetical protein

13353

3

-

-

-

-

-

-

-

Hypothetical protein

13392

3

-

-

-

-

-

-

-

GDP-D-mannose 4,6-dehydratase

14410

3

-

-

-

-

-

-

-

No hits found

14413

3

-

-

-

-

-

-

-

No hits found

14414

3

-

-

-

-

-

-

-

Aspartate aminotransferase superfamily protein

14418

3

-

-

-

-

-

-

-

HAT transposase element

14420

3

-

-

-

-

-

-

-

Protein translation factor SUI1

8498

2

5

-

-

-

-

-

 

Rapid Alkalinization Factor (RALF)-like protein

9023

2

3

-

-

-

1

-

-

GTP binding protein

10281

2

3

-

-

-

-

-

-

No hits found

12371

2

2

-

-

-

-

-

 

Hydroxyproline-rich glycoprotein/extension

12375

2

2

-

 

-

-

-

-

No hits found

1715

-

4

1

2

1

8

-

-

Viroid polyprotein ORF4 protein

6375

-

4

2

1

1

-

-

-

NBS LRR resistance protein

9679

-

3

1

-

1

1

-

-

Replication factor A 1

10952

-

3

1

-

-

1

-

-

LTR retrotransposon

11055

-

5

-

-

-

-

-

-

Small glycine-rich protein

14392

-

3

-

-

-

-

-

-

Kelch repeat-containing phosphatase

14397

-

3

-

-

-

-

-

-

Albumin/sulfur-rich seed storage protein

14809

-

3

-

-

-

-

-

-

Hypothetical protein

14813

-

3

-

-

-

-

-

-

Miraculin-like protein

14814

-

3

-

-

-

-

-

-

Invertase inhibitor

  1. * Annotation based on BLASTX-NR (E-value 1e-5).