Table 1 Microsatellites, simples sequence repeat (SSR) class and motif type found with in EST collections positive for SSR loci
Tissue/Library type | Genotype/Gene pool | EST collection/author | EST No. | EST-SSRs found | 2-nt | 3-nt | 4-nt | 5/6nt | % EST-SSRs | GenBank entries for ESTs |
|---|---|---|---|---|---|---|---|---|---|---|
Leaf cDNA | G19833 | Blair (2002) | 540 | 64 | 9 | 34 | 21 | 0 | 11.9 | BQ481427-BQ481965, |
Leaf cDNA | G19833 | Blair (this study) | 768 | 27 | 10 | 16 | 0 | 1 | 3.5 | HS089176-HS089943 |
subtotal | Andean | NA | 1308 | 91 | 19 | 50 | 21 | 1 | 7.0 | NA |
HP root cDNA | DOR364 | Blair (this study) | 862 | 47 | 20 | 23 | 2 | 2 | 5.5 | HS103978-HS104836 |
LP root cDNA | DOR364 | Blair (this study) | 953 | 46 | 10 | 26 | 0 | 2 | 4.8 | HS103028-HS103977 |
subtotal | Mesoamerican | NA | 1815 | 93 | 30 | 49 | 2 | 4 | 5.1 | NA |
grand total | Andean/Meso american | NA | 3123 | 184 | 57 | 99 | 23 | 5 | 5.9 | NA |