Table 2 Percentage of SSR types across four EST collections
SSR Type/Genotype/Tissue source | G19833 set 1leaf cDNAs | G19833 set 2 leaf cDNAs | DOR364 root HP | DOR364 root LP | Total SSR and Seq. |
|---|---|---|---|---|---|
Di-nucleotide motifs 1 | Â | Â | Â | Â | Â |
ac/gt/ca/tg | 11.1 | 10.0 | 0.0 | 11.1 | 7.0 |
ag/ct/ga/tc | 88.9 | 50.0 | 85.0 | 61.1 | 71.9 |
at/ta | 0.0 | 40.0 | 15.0 | 27.8 | 21.1 |
gc/cg | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
Tri-nucleotide motifs | Â | Â | Â | Â | Â |
aag/aga/gaa/ttc/tct/ctt | 11.8 | 25.0 | 30.4 | 30.8 | 23.2 |
aat/ata/taa/tta/tat/att | 2.9 | 0.0 | 4.3 | 7.7 | 4.0 |
aac/aca/caa/ttg/tgt/gtt | 8.8 | 6.3 | 13.0 | 3.8 | 8.1 |
acc/cac/cca/tgg/gtg/ggt | 17.6 | 6.3 | 4.3 | 19.2 | 13.1 |
agc/cag/gca/tcg/gtc/cgt | 17.6 | 12.5 | 13.0 | 3.8 | 12.1 |
agg/gag/gga/tcc/ctc/cct | 20.6 | 6.3 | 17.4 | 15.4 | 16.2 |
atc/cat/tca/tag/gta/agt | 2.9 | 37.5 | 8.7 | 11.5 | 12.1 |
ccg/gcc/cgc/ggc/cgg/cgc | 2.9 | 0.0 | 4.3 | 0.0 | 2.0 |
gac/cga/acg/ctg/gct/tgc | 14.7 | 6.3 | 4.3 | 7.7 | 9.1 |