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Table 4 Up- or down-regulation of transcripts in HC-Pro expressing plants

From: HC-Pro silencing suppressor significantly alters the gene expression profile in tobacco leaves and flowers

Leaf

  

Leaf

  

EST/mRNA

Fold

Description

EST/mRNA

Fold

Description

NP917355

5.1

Nicotiana tabacum mRNA for ERF1

TA18922_4097

0.2

Solanum lycopersicum CONSTANS 1

FG145666

4.6

Nicotiana tabacum RAV mRNA

EB427139

0.2

Populus nigra PnLHY2 mRNA for transcription factor LHY

EH620499

3.4

Arabidopsis thaliana PLPB (PAS/LOV PROTEIN B)

TA16366_4097

0.3

Glycine max MYB transcription factor MYB118 (MYB118) mRNA

AB063574

2.5

Nicotiana tabacum WRKY DNA-binding protein

EB434774

0.3

Arabidopsis thaliana ATHB-7 (At-HOMEOBOX 7 )

FG637951

2.4

Nicotiana sylvestris nserf3 gene for ethylene-responsive element binding 3

EB435512

0.3

Arabidopsis thaliana CDF1 (CYCLING DOF FACTOR 1)

DV159714

2.4

Medicago truncatula GIGANTEA protein

TA14638_4097

0.4

Castanea sativa Late elongated hypocotyl (LHY)

EB433445

2.4

Arabidopsis thaliana mRNA for RNA polymerase sigma subunit SigD SIG4 (SIGMA FACTOR 4)

EB428015

0.4

Nicotiana sylvestris Ethylene-responsive transcription factor 4 (ERF4)

DW002999

2.2

Arabidopsis thaliana KTF1 (KOW DOMAIN CON-TAINING TRANSCRIPTION FACTOR 1)

FG641901

0.4

Arabidopsis thaliana basic helix-loop-helix (bHLH) protein

DV162575

2.1

Arabidopsis thaliana Transcription initiation factor IIB-2

FG642227

0.4

Solanum tuberosum MADS transcriptional factor (Stmads11) mRNA

TA15319_4097

2.0

Nicotiana tabacum WIZZ, JA-induced WRKY mRNA

DV999024

0.4

Populus trichocarpa SAUR family protein (SAUR23), mRNA, Auxin responsive

Flower

  

TC4480

0.4

Solanum tuberosum Jasmonic acid 2, NAC-transcription factor

TA13711_4097

2.6

Nicotiana tabacum RAV mRNA

TA17590_4097

0.5

Oryza sativa WRKY transcription factor 65 (WRKY65) gene

DV999109

2.3

Nicotiana tabacum Ethylene-responsive transcription factor 1 (ERF1)

EB446153

0.5

Tobacco mRNA for TGA1a DNA-binding protein; bZIP transcription factor

TA15319_4097

2.1

Nicotiana tabacum WIZZ JA-induced WRKY mRNA

EB424613

0.5

Camellia sinensis MYB transcription factor

TA16951_4097

2.1

Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein

DW004709

0.5

Lycopersicon esculentum AREB-like protein mRNA; bZIP transcription factor;

AF193771

2.0

Nicotiana tabacum DNA-binding protein 4 (WRKY4) mRNA

   
  1. HC-Pro expression alters significantly (p < 0.05) expression of several transcription factor genes.
  2. Fold change is indicated as a ratio of HC-Pro/WT calculated from normalized median intensity values (n = 3).