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Table 1 Characteristics of Dicer-like and Argonaute coding sequences and proteins identified in M. truncatula.

From: In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways

Gene Name

BAC

IMGAG Gene Loci

MTGI9.0

acession

Protein

Chr.

Genomic Region

(start-end)

BLASTn

BLASTp

    

Size

(a.a.)

MW

(KDa)

pI

(pH)

   

Dicer-like genes

MtDCL1

AC150443

Medtr7g146220.1

NP7270921

TC129362

1939

218.32

6.22

7

34948437-34935433

AtDCL1

MtDCL2

AC192958

Medtr2g129960.1

 

1416

160.96

7.30

2

31566180-31555830

AtDCL2

MtDCL3

AC137830

Medtr3g139020.1

NP7267858

NP7267870

1727

192.35

6.68

3

35653717-35640861

AtDCL3

Argonautes

MtAGO1

  

TC126820

1046

116.02

9.47

  

AtAGO1

MtAGO12a

AC160838

Medtr8g118920.1

 

876

98.62

8.79

8

26846440-26851968

AtAGO10

MtAGO12b

AC231336

Medtr2g074590.1

Medtr2g074600.1

Medtr2g074610.1

 

732

83.56

8.37

2

17220707-17227158

AtAGO10

MtAGO12c

AC136450

AC231336

Medtr2g074570.1

NP7267711

520

59.61

9.99

2

17189793-17194311

AtAGO10

MtAGO2a

AC225510

Medtr4g114860.1

TC135942

TC116031

TC136095

916

103.54

9.03

4

26413990-26408838

AtAGO2

MtAGO2b

AC209534

Medtr2g034460.1

 

883

100.58

9.01

2

9642645-9638911

AtAGO2

MtAGO7

CU179907

Medtr5g045600.1

AW693202

BI309506

1016

116.65

9.44

5

19094952-19099268

AtAGO7

MtAGO4a

AC147429

Medtr3g111450.1

TC114668

TC126933

824

92.40

8.80

3

28346658-28352637

AtAGO4

MtAGO4b

AC131455

Medtr5g094930.1

TC114471

942

105.49

9.20

5

37632339-37642376

AtAGO4

MtAGO4c

AC131455

Medtr5g094940.1

TC112620

912

102.97

9.32

5

37643490-37650687

AtAGO4

MtAGO6

CU468297

Medtr3g105930.1

 

935

104.52

8.57

3

26600859-26609775

AtAGO6

MtAGO11

CT030192

Medtr3g016400.1

 

886

101.10

9.18

3

3169515-3175689

AtAGO4

  

Medtr3g016410.1

       
  

Medtr3g016420.1

       
  1. BLASTn and BLASTp were performed with the MtAGOs and MtDCLs against the A. thalian a databases in NCBI [36]. BAC, Bacterial artificial chromosome accession number in Mt3.0; IMGAG, the International Medicago Genome Annotation Group; MTGI9.0, Medicago truncatula Gene Index (MTGI) 9.0 reference; MW, Molecular Weight; pI, Isoelectric point; Chr., Chromosome.
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BMC Plant Biology

ISSN: 1471-2229

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