Table 4 GeneChip array data analysis of the maize genes encoding the proteins identified by mass spectrometry.
From: Transcriptomic and proteomic profiling of maize embryos exposed to camptothecin
Spot ID | Gene | TBLASTN | Affymetrix chip data | ||||
|---|---|---|---|---|---|---|---|
| Â | Â | GB# | Score | Probe Set ID | Log2(R) | p-value | FDR |
U1 | Chloroplast Cu/Zn superoxide dismutase | ||||||
| Â | Â | NM_001114655 | 0 | Zm.9031.1.S1_at | -0.19 | 0.18 | 0.74 |
U2 | Cytosolic ascorbate peroxidase 1 | ||||||
| Â | Â | EU966070 | 1e-169 | Zm.3633.8.A1_at | 0.18 | 0.58 | 0.96 |
| Â | Â | n.d. | 1e-163 | Zm.3633.6.S1_at | 0.23 | 0.42 | 0.92 |
| Â | Â | n.d. | 1e-150 | Zm.3633.8.S1_x_at | 0.28 | 0.43 | 0.93 |
| Â | Â | n.d. | 1e-144 | Zm.3633.2.S1_x_at | 0.01 | 0.93 | 1.00 |
| Â | Â | n.d. | 1e-138 | Zm.3633.3.S1_x_at | 0.07 | 0.74 | 0.98 |
U3 | Glutathione S-transferase GST19 | ||||||
| Â | Â | AF244684 | 0 | Zm.548.1.S1_at | 0.12 | 0.59 | 0.96 |
D3 | 26S proteasome non-ATPase regulatory subunit 4 | ||||||
| Â | Â | EU965376 | 0.00 | Zm.5851.1.A1_at | 0.15 | 0.12 | 0.64 |
| Â | Â | n.d. | 1e-32 | Zm.7644.2.S1_x_at | 0.18 | 0.29 | 0.85 |
U2 | 26S proteasome non-ATPase regulatory subunit 8 | ||||||
| Â | Â | EU968302 | 1e-154 | Zm.6666.1.S1_at | -0.11 | 0.52 | 0.95 |
| Â | Â | n.d. | 4e-97 | Zm.6666.2.S1_at | -0.02 | 0.91 | 1.00 |
D4 | Eukaryotic translation initiation factor eIF-5A | ||||||
| Â | Â | Y07920 | 0.00 | Zm.1314.1.A1_at | 0.10 | 0.29 | 0.85 |
| Â | Â | n.d. | 0.00 | Zm.3545.1.A1_at | 0.14 | 0.14 | 0.68 |
D5 | Eukaryotic translation initiation factor eIF-6 | ||||||
| Â | Â | EU961480 | 0.00 | Zm.7096.1.A1_at | 0.13 | 0.50 | 0.94 |
D10 | Glyceraldehyde-3-phosphate dehydrogenase | ||||||
| Â | Â | X07156 | 0.00 | Zm.3765.1.S1_s_at | 0.08 | 0.52 | 0.95 |
| Â | Â | n.d. | 0.00 | AFFX-Zm_Gapdh_M_f_at | 0.11 | 0.53 | 0.95 |
| Â | Â | n.d. | 0.00 | AFFX-Zm_Gapdh_5_f_at | 0.08 | 0.78 | 0.99 |
| Â | Â | n.d. | 1e-118 | Zm.16502.1.S1_at | 0.13 | 0.51 | 0.95 |
| Â | Â | n.d. | 2e-99 | AFFX-Zm_Gapdh_3_s_at | 0.10 | 0.33 | 0.87 |
| Â | Â | n.d. | 6e-96 | AFFX-Zm-gapdh-M_s_at | 0.27 | 0.65 | 0.97 |
U7 | Glyceraldehyde-3-phosphate dehydrogenase | ||||||
| Â | Â | AF348583 | 1e-19 | Zm.8992.2.A1_a_at | -0.16 | 0.62 | 0.96 |
D11 | Glyceraldehyde-3-phosphate dehydrogenase | ||||||
| Â | Â | AF348583 | 5e-10 | AFFX-Zm_Gapdh_M_f_at | 0.11 | 0.53 | 0.95 |
D12 | Triosaphosphate isomerase 1 | ||||||
| Â | Â | AH005585 | 1e-102 | Zm.3889.1.A1_at | 0.44 | 0.01 | 0.23 |
| Â | Â | n.d. | 6e-67 | Zm.3889.6.S1_at | 0.15 | 0.50 | 0.94 |
D6 | Histone H2B | ||||||
| Â | Â | X57312 | 0.00 | Zm.16065.1.S1_at | 0.30 | 0.20 | 0.76 |
| Â | Â | n.d. | 1e-134 | Zm.14497.4.A1_at | 0.36 | 0.15 | 0.70 |
| Â | Â | n.d. | 1e-124 | Zm.14497.1.A1_at | 0.22 | 0.71 | 0.98 |
| Â | Â | n.d. | 1e-115 | Zm.15914.3.A1_s_at | 0.63 | 0.19 | 0.74 |
D7 | Regulator of RNAse activity A | ||||||
| Â | Â | NM_191820 | 6e-94 | Zm.12138.1.S1_at | 0.06 | 0.85 | 0.99 |
| Â | Â | n.d. | 1e-61 | Zm.13462.1.A1_at | 0.20 | 0.04 | 0.43 |
U5 | Regulator of RNAse activity A | ||||||
| Â | Â | EU958419 | 0.00 | Zm.12138.1.S1_at | 0.06 | 0.85 | 0.99 |
| Â | Â | n.d. | 3e-32 | Zm.13462.1.A1_at | 0.20 | 0.04 | 0.43 |
D6 | DEAD-family RNA helicase | ||||||
| Â | Â | BT066085 | 0.00 | Zm.13462.1.A1_at | 0.20 | 0.04 | 0.43 |
| Â | Â | n.d. | 1e-37 | Zm.12138.1.S1_at | 0.06 | 0.85 | 0.99 |
U6 | Glycine-rich RNA-binding protein 8 | ||||||
| Â | Â | EU963577 | 1e-119 | Zm.13944.7.A1_a_at | 0.07 | 0.67 | 0.97 |
| Â | Â | n.d. | 2e-73 | Zm.13944.6.S1_a_at | -0.15 | 0.69 | 0.98 |
D9 | RNA recognition motif containing protein | ||||||
| Â | Â | BT065318 | 0 | Zm.6941.1.A1_at | -0.17 | 0.07 | 0.51 |
| Â | Â | n.d. | 1e-133 | Zm.18107.1.S1_s_at | -0.07 | 0.61 | 0.96 |
| Â | Â | n.d. | 1e-97 | ZmAffx.915.1.S1_at | 0.00 | 0.99 | 1.00 |
D1 | Pathogenesis-related protein 1 | ||||||
| Â | Â | EU957420 | 0.00 | Zm.1967.1.A1_at | 0.97 | 0.18 | 0.73 |
D2 | Bet v I allergen | ||||||
| Â | Â | AY754698 | 1e-164 | Zm.7135.1.S1_at | 0.26 | 0.19 | 0.75 |
U8 | G-protein β-subunit | ||||||
| Â | Â | NM_192099 | 3e-45 | Zm.6045.7.A1_a_at | -0.10 | 0.40 | 0.91 |
D13 | Syntaxin 6 | ||||||
| Â | Â | NM_001072375 | 3e-16 | Zm.3182.1.A1_at | -0.08 | 0.52 | 0.95 |
U16 | r40c1 protein | ||||||
| Â | Â | BT042893 | 0.00 | Zm.886.4.S1_x_at | -0.03 | 0.90 | 1.00 |
U9 | Mitochondrial ATP synthase precursor | ||||||
| Â | Â | EU966003 | 0.00 | Zm.5566.1.A1_a_at | 0.17 | 0.10 | 0.61 |
| Â | Â | n.d. | 0.00 | Zm.886.5.S1_a_at | -0.01 | 0.98 | 1.00 |
| Â | Â | n.d. | 0.00 | Zm.886.5.A1_at | -0.21 | 0.37 | 0.90 |
| Â | Â | n.d. | 0.00 | Zm.886.2.S1_at | 0.14 | 0.32 | 0.87 |
| Â | Â | n.d. | 3e-98 | Zm.12295.2.S1_a_at | 0.21 | 0.52 | 0.95 |
| Â | Â | n.d. | 6e-81 | Zm.886.1.A1_a_at | 0.17 | 0.81 | 0.99 |
D15 | Cupin domain containing protein | ||||||
| Â | Â | BT024037 | 7e-04 | Zm.2927.1.A1_at | 0.36 | 0.02 | 0.30 |