Table 2 Occurrence list of enriched motifs and modules in early and late auxin-inducible promoters from A. thaliana
combination | ORDER | 0.5 h UP (179) |  | 1 h UP (250) |  | 3 h UP (398) |
|---|---|---|---|---|---|---|
singles | 1 | AUX2 (134) | 1 | GRE (172) | 1 | GRE (273) |
| Â | 2 | GRE (123) | 2 | MYC2 (136) | 2 | MYC2 (197) |
| Â | 3 | AUX1 (93) | 3 | AUX1 (129) | 3 | RY (27) |
| Â | 4 | MYC2 (91) | Â | .. | Â | .. |
| Â | Â | .. | 1* | AUX2 (181) | Â | .. |
bipartite | 1 | GRE-AUX2 (33) | 1 | GRE-MRE2 (122) | 1 | GRE-MRE2 (188) |
| Â | 2 | GRE-MRE1 (32) | 2 | GRE-AUX2 (43) | 2 | MRE1-GRE (65) |
| Â | 3 | MYC2-AUX2 (27) | 3 | AUX2-GRE (39) | 3 | MYC2-AUX2 (42) |
| Â | 4 | AUX2-MYC2 (23) | 4 | MYC2-AUX2 (34) | 4 | GRE-MYC2 (37) |
| Â | 5 | GRE-AUX1 (21) | 5 | GRE-AUX1 (32) | 5 | AUX2-MYC2 (35) |
| Â | 6 | AUX1-MYC2 (14) | 6 | AUX2-MYC2 (28) | 6 | GRE-AUX1 (31) |
| Â | 7 | MYC2-AUX1 (13) | 7 | AUX1-MYC2 (17) | 7 | AUX1-MYC2 (20) |
| Â | 8 | MRE2-RY (9) | 8/9 | RY-MRE2 (13) | 8 | RY-MRE2 (18) |
| Â | Â | .. | 8/9 | MYC2-AUX1 (13) | 9 | MRE2-RY (15) |
| Â | Â | .. | 10 | MRE2-RY (11) | Â | .. |
tripartite | 1 | GRE-AUX2-MRE2 (22) | 1 | GRE-AUX2-MRE2 (27) | Â | .. |
| Â | 2 | GRE-AUX1-MRE2 (15) | 2 | GRE-AUX1-MRE2 (20) | Â | .. |
| Â | 3 | MRE2-GRE-AUX1 (13) | 3 | MRE2-GRE-AUX1 (19) | Â | .. |
| Â | 4 | GRE-AUX2-MRE1 (8) | 4 | GRE-AUX2-MRE1 (9) | Â | .. |