SSH librariesa | Total ESTs sequences | Length of sequence (bp) | Contigs | Singletons | Non-redundant ESTs | Redundant (%) | Unique (%) | Hit rate using the BLAST program in Blast2GO tool (%)b | Hit rate using the local BLAST program (%) | Automatic annotation rate (%) | Manual annotation rate (%)d | Total annotation rate (%) | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Tester | Drivers | Â | Â | Â | Â | Â | Â | Â | blastx to nrDB1) | tblastx to nrDB2) | tblastx to estDB3) | blastn to estDB4) | no hit | blastn to PGIC | Â | Â | Â |
R_1dpi | S_1dpi | 437 | 102-775 | 14 | 406 | 420 | 3.9 | 96.1 | 71.0 | 17.1 | 7.0 | 3.8 | 1.1 | 97.1 | 65.8 | 9.7 | 75.5 |
S_1dpi | R_1dpi | 449 | 108-777 | 52 | 214 | 266 | 40.8 | 59.2 | 79.7 | 10.8 | 7.5 | 1.6 | 0.4 | 96.9 | 73.3 | 6.9 | 80.2 |
R_3dpi | S_3dpi | 455 | 102-775 | 43 | 344 | 387 | 14.9 | 85.1 | 72.4 | 15.7 | 7.5 | 3.5 | 0.9 | 97.6 | 65.1 | 10.6 | 75.7 |
S_3dpi | R_3dpi | 440 | 101-760 | 43 | 272 | 315 | 28.4 | 71.6 | 81.1 | 12.2 | 4.1 | 1.4 | 1.2 | 96.4 | 77.0 | 7.4 | 84.4 |
R_7dpi | S_7dpi | 528 | 100-767 | 41 | 394 | 435 | 17.6 | 82.4 | 79.5 | 10.3 | 6.9 | 3.0 | 0.3 | 98.0 | 74.1 | 7.8 | 81.9 |
S_7dpi | R_7dpi | 508 | 104-780 | 48 | 90 | 138 | 72.8 | 27.2 | 91.8 | 5.9 | 1.7 | 0.6 | 0.0 | 99.4 | 84.7 | 6.3 | 91.0 |
R_14dpi | S_7dpi | 482 | 106-764 | 52 | 299 | 351 | 27.2 | 72.8 | 73.8 | 15.3 | 7.2 | 3.3 | 0.4 | 98.0 | 66.7 | 11.0 | 77.7 |