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Table 2 List of NBS-LRR genes on the recently duplicated region and disease resistance QTL in the 2-Mb flanking regions of the recently duplicated regions in soybean

From: Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean

Recent duplication ID Duplication counterpart Disease resistance QTL NBS-LRR genes
  Chromosome A Chromosome A’ Chromosome A Chromosome A’ Chromosome A’ Chromosome A’
  Chr Start End Chr Start End     
10176681 Gm01 0.97 2.34 Gm09 39.67 40.82 SCN 19-3, SCN 20-3, SCN 21-2 Sclero 2-17, Sclero 3-12 Glyma01g01400, Glyma01g01420 Glyma09g34360, Glyma09g33570, Glyma09g34380
10176680 Gm01 5.04 13.07 Gm02 9.94 12.69 SCN 26-2 SDL2178, Phytoph 1-2 Glyma01g08640, Glyma01g05710 Glyma02g12300
10176678 Gm01 48.26 54.67 Gm11 1.06 6.86 Sclero 2-5, Sclero 3-4, Sclero 4-1, Sclero 5-3 8ra Glyma01g37620, Glyma01g39000, Glyma01g39010 Glyma11g06260, Glyma11g03780, Glyma11g07680
22835159 Gm03 35.08 47.75 Gm19 37.95 50.53 Sclero 3-16, SDS 8-3 8ra, OCS-F, OCS-G, LMG7403, Sclero 2-20, Sclero 3-14, Sclero 5-12, Sclero 6-9 Glyma03g29270, Glyma03g29370 Glyma19g32150, Glyma19g32090, Glyma19g32110, Glyma19g32180, Glyma19g32080
8358327 Gm08 5.50 11.35 Gm05 30.61 37.28 OCS-G, Sclero 2-2, Sclero 3-2, Sclero 5-1, Sclero 6-2, SCN 29-5, SCN 29-6, SCN 29-7, SCN 30-3, SCN 1-1 LMG7403, Sclero 2-1, Sclero 3-1, Sclero 6-1 Glyma08g12990 Glyma05g29880
18934088 Gm09 32.76 36.86 Gm16 35.20 37.17 Sclero 2-16, Sclero 3-11, Sclero 4-7, Sclero 5-10 BSR 3-1, BSR 4-1, BSR 5-2, BSR 6-1, BSR 6-10, BSR 6-2, BSR 6-3, BSR 6-4, BSR 6-5, BSR 6-6, BSR 6-7, BSR 6-8, BSR 6-9, SCN 28-2, SCN 28-4, SCN 29-2, SCN 1-2, SCN 5-2 Glyma09g29050 Glyma16g33780, Glyma16g33920, Glyma16g34070, Glyma16g33910, Glyma16g34030, Glyma16g33680, Glyma16g32320, Glyma16g33610, Glyma16g34090, Glyma16g33590, Glyma16g33950, Glyma16g34000, Glyma16g33930, Glyma16g34110, Glyma16g33940
18934087 Gm09 42.53 46.38 Gm18 53.56 59.09 Sclero 2-18 Sclero 2-14, Sclero 3-10, Sclero 4-6, Sclero 5-9, Sclero 6-7, Mi 3-2, Mi 4-1, Mi 1-3, Mi 1-4, Mi 2-2, SCN 4-2 Glyma09g39410 Glyma18g46100, Glyma18g46050
18159398 Gm15 39.83 44.16 Gm13 28.75 30.20 Ma 2-2 Sclero 2-12, Sclero 3-9, Sclero 4-4, Sclero 5-6, Sclero 6-5, Ma 1-2, Mj 1-4 Glyma15g37080, Glyma15g36990, Glyma15g35920, Glyma15g37140, Glyma15g37790, Glyma15g35850, Glyma15g37340, Glyma15g37320, Glyma15g37290, Glyma15g36940, Glyma15g36930, Glyma15g37390, Glyma15g37310 Glyma13g25920, Glyma13g26380, Glyma13g26460, Glyma13g25950, Glyma13g25750, Glyma13g26250, Glyma13g26530, Glyma13g25970, Glyma13g26420, Glyma13g25780, Glyma13g26000, Glyma13g26310, Glyma13g26140, Glyma13g26230
11590712 Gm17 39.27 41.04 Gm14 5.85 7.94 Sclero 2-10, Sclero 3-7, Sclero 6-4 SCN 17-2, SCN 19-2 Glyma17g36400, Glyma17g36420 Glyma14g08700, Glyma14g08710
10856314 Gm20 33.04 44.67 Gm10 39.46 50.28 OCS-G, SDL2178, SDS 7-6 8ra, Sclero 2-22, Sclero 2-23, Sclero 2-24, Sclero 3-17, Sclero 3-18, Sclero 3-19, Sclero 4-10, Sclero 4-11, Sclero 5-14, Sclero 5-15, Sclero 5-16, Sclero 6-11, Sclero 6-12, Sclero 6-13 Glyma20g33530, Glyma20g33740, Glyma20g34860 Glyma10g32780, Glyma10g32800, Glyma10g34060
  1. * Chromosome A and A’ represent the recently duplicated region.
  2. ** Fungal resistance QTL: Sclerotinia stem rot (Sclero), Sudden death syndrome (SDS), Brown stem rot (BSR), Phytophthora sojae infection (Phytoph); Nematode resistance QTL: Soybean cyst nematode (SCN), Peanut root-knot nematode (Ma), Southern root-knot nematode (Mi), Javanese root-knot nematode (Mj); Bacterial leaf pustule resistance QTL (BLP): OCS-G, SDL2178, 8ra, OCS-F, LMG7403.