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Table 1 Sequencing statistics and mapping results for parental lines using Maq-default and Maq-120 analysis

From: Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

   

Maq-default analysis

Maq-120 analysis

Library

PE reads

Raw reads

raw reads mapping

%

reads in pairs

% 1

raw reads mapping

%

reads in pairs

% 1

LDN

25,602,724

51,205,448

25,496,798

49.8%

20,052,438

78.6%

29,290,176

57.2%

22,863,235

78.1%

RSL65

31,721,926

63,443,852

29,892,394

47.1%

20,079,735

67.2%

34,014,128

53.6%

22,244,586

65.4%

Total

57,324,650

114,649,300

55,389,192

48.3%

40,132,173

72.5%

63,304,304

55.2%

45,107,821

71.3%

  1. 1 = (reads in pairs/raw reads mapping)*100
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BMC Plant Biology

ISSN: 1471-2229

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