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Table 2 Annotations of sRNAs perfectly matching A. thaliana and P. trichocarpa genomes

From: Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing

 

A. thaliana

P. trichocarpa

Class *

Unique

Total

Unique

Total

Match genome

73,317

6,612,119

66,269

5,825,093

Known miRNA

584

1,402,527

375

1,383,562

r/t/sn/snoRNA

39,304

5,136,628

35,706

3,097,919

Repeat

2603

10,280

  

Exon-sense

21,764

35,844

6937

127,584

Exon-antisense

2171

6126

7125

608,685

Intron-sense

239

435

542

2221

Intron-antisense

244

681

678

1134

Un-annotated

6408

19,598

14,906

603,988

  1. *sRNA categories, repeat, exon-sense, exon-antisense, intron-sense and intron-antisense, contain sRNAs perfectly matching the repeat sequences in the GenBank databases and Rfam database, the sense strand of a protein coding gene exon, the antisense strand of a protein coding gene exon, the sense strand of a protein coding gene intron and the antisense strand of a protein coding gene intron, respectively.