Genome-wide association studies for agronomical traits in a world wide spring barley collection

Pasam, Raj K; Sharma, Rajiv; Malosetti, Marcos; van Eeuwijk, Fred A; Haseneyer, Grit; Kilian, Benjamin; Graner, Andreas

doi:10.1186/1471-2229-12-16

BMC Plant Biology

Table 11 GWAS results for trait crude protein content

From: Genome-wide association studies for agronomical traits in a world wide spring barley collection

SNP	Chr	Position	MAF	P-Value	-log10 (P)	R² (%)	Effect	QTL	Reference QTL	Literature
SNP47	1H	55.49	0.50	0.0044	2.36	0.78	0.74	QTl1_CPC
SNP97	1H	114.84	0.25	0.0139	1.86	0.56	-0.85	QTL2_CPC
SNP136	2H	33.74	0.35	0.0310	1.51	0.45	0.39	QTL3_CPC	QPc.nab-2H.1;Qcp2a	[67, 76]
SNP170	2H	63.53	0.32	0.0190	1.72	0.54
SNP173	2H	63.53	0.33	0.0115	1.94	0.62	0.72	QTL4_CPC	QGpc.StMo-2H.2	[67, 75]
SNP174	2H	63.53	0.41	0.0055	2.26	0.74
SNP177	2H	63.53	0.32	0.0116	1.94	0.61
SNP200	2H	74.37	0.25	0.0071	2.15	0.72	-0.56	QTL5_CPC
SNP205	2H	78.03	0.40	0.0296	1.53	0.47
SNP226	2H	96.82	0.23	0.0056	2.25	0.66	-0.90	QTL6_CPC	QPc.nab-2H.1	[67]
SNP227	2H	96.82	0.19	0.0160	1.80	0.55
SNP244	2H	116.49	0.24	0.0242	1.62	0.48	-0.47	QTL7_CPC	QGpc.HaMo-2H.2	[75]
SNP272	2H	147.94	0.26	0.0103	1.99	0.62	-0.52	QTL8_CPC
SNP305	3H	47.09	0.16	0.0020	2.70	0.86	-1.466	QTL9_CPC
SNP322	3H	55.57	0.18	0.0093	2.03	0.64
SNP357	3H	72.26	0.32	0.0159	1.80	0.51	-0.47	QTL10_CPC
SNP401	3H	122.14	0.24	0.0062	2.21	0.68	0.60	QTL11_CPC	Qcp3a	[76]
SNP409	3H	130.82	0.41	0.0146	1.84	0.54
SNP518	4H	79.58	0.45	0.0006	3.22	1.09	-0.75	QTL12_CPC	QGpc.HaTR-4H.2	[77]
SNP531	4H	97.06	0.11	0.0281	1.55	0.45	0.79
SNP534	4H	101.62	0.16	0.0025	2.60	0.87		QTL13_CPC	QGpc.StMo-4H	[69]
SNP537	4H	108.70	0.21	0.0016	2.80	0.92
SNP616	5H	74.78	0.51	0.0107	1.97	0.54	-0.814	QTL14_CP	QGpc.HaMo-5H	[67, 75]
SNP623	5H	85.93	0.16	0.0082	2.09	0.61
SNP643	5H	110.26	0.10	0.0055	2.26	0.73	1.52	QTL15_CPC	QGpc.DiMo-5H.2	[78]
SNP699	5H	171.66	0.11	0.0219	1.66	0.53		QTL16_CPC
SNP807	6H	83.89	0.25	0.0020	2.70	0.91	0.67	QTL17_CPC
SNP844	7H	12.42	0.10	0.0214	1.67	0.51	0.79	QTL18_CPC
SNP855	7H	38.32	0.35	0.0019	2.72	0.91	-0.86	QTL19_CPC
SNP860	7H	46.19	0.26	0.0314	1.50	0.45
SNP871	7H	61.32	0.24	0.0285	1.55	0.46	-0.50	QTL20_CPC	QPc.nab-7H	[67]
SNP904	7H	80.94	0.22	0.0036	2.44	0.85	-0.68	QTL21_CPC	QGpc.HaTR-7H	[77]
SNP925	7H	112.46	0.37	0.0210	1.68	0.49	0.41	QTL22_CPC
SNP930	7H	121.09	0.07	0.00001	4.73	1.57	1.54	QTL23_CPC

Significant markers associated for CPC with K-model, their MAF, P-value of association, variance explained by marker (R²), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

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ISSN: 1471-2229

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