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Table 11 GWAS results for trait crude protein content

From: Genome-wide association studies for agronomical traits in a world wide spring barley collection

SNP Chr Position MAF P-Value -log10 (P) R2 (%) Effect QTL Reference QTL Literature
SNP47 1H 55.49 0.50 0.0044 2.36 0.78 0.74 QTl1_CPC   
SNP97 1H 114.84 0.25 0.0139 1.86 0.56 -0.85 QTL2_CPC   
SNP136 2H 33.74 0.35 0.0310 1.51 0.45 0.39 QTL3_CPC QPc.nab-2H.1;Qcp2a [67, 76]
SNP170 2H 63.53 0.32 0.0190 1.72 0.54     
SNP173 2H 63.53 0.33 0.0115 1.94 0.62 0.72 QTL4_CPC QGpc.StMo-2H.2 [67, 75]
SNP174 2H 63.53 0.41 0.0055 2.26 0.74     
SNP177 2H 63.53 0.32 0.0116 1.94 0.61     
SNP200 2H 74.37 0.25 0.0071 2.15 0.72 -0.56 QTL5_CPC   
SNP205 2H 78.03 0.40 0.0296 1.53 0.47     
SNP226 2H 96.82 0.23 0.0056 2.25 0.66 -0.90 QTL6_CPC QPc.nab-2H.1 [67]
SNP227 2H 96.82 0.19 0.0160 1.80 0.55     
SNP244 2H 116.49 0.24 0.0242 1.62 0.48 -0.47 QTL7_CPC QGpc.HaMo-2H.2 [75]
SNP272 2H 147.94 0.26 0.0103 1.99 0.62 -0.52 QTL8_CPC   
SNP305 3H 47.09 0.16 0.0020 2.70 0.86 -1.466 QTL9_CPC   
SNP322 3H 55.57 0.18 0.0093 2.03 0.64     
SNP357 3H 72.26 0.32 0.0159 1.80 0.51 -0.47 QTL10_CPC   
SNP401 3H 122.14 0.24 0.0062 2.21 0.68 0.60 QTL11_CPC Qcp3a [76]
SNP409 3H 130.82 0.41 0.0146 1.84 0.54     
SNP518 4H 79.58 0.45 0.0006 3.22 1.09 -0.75 QTL12_CPC QGpc.HaTR-4H.2 [77]
SNP531 4H 97.06 0.11 0.0281 1.55 0.45 0.79    
SNP534 4H 101.62 0.16 0.0025 2.60 0.87   QTL13_CPC QGpc.StMo-4H [69]
SNP537 4H 108.70 0.21 0.0016 2.80 0.92     
SNP616 5H 74.78 0.51 0.0107 1.97 0.54 -0.814 QTL14_CP QGpc.HaMo-5H [67, 75]
SNP623 5H 85.93 0.16 0.0082 2.09 0.61     
SNP643 5H 110.26 0.10 0.0055 2.26 0.73 1.52 QTL15_CPC QGpc.DiMo-5H.2 [78]
SNP699 5H 171.66 0.11 0.0219 1.66 0.53   QTL16_CPC   
SNP807 6H 83.89 0.25 0.0020 2.70 0.91 0.67 QTL17_CPC   
SNP844 7H 12.42 0.10 0.0214 1.67 0.51 0.79 QTL18_CPC   
SNP855 7H 38.32 0.35 0.0019 2.72 0.91 -0.86 QTL19_CPC   
SNP860 7H 46.19 0.26 0.0314 1.50 0.45     
SNP871 7H 61.32 0.24 0.0285 1.55 0.46 -0.50 QTL20_CPC QPc.nab-7H [67]
SNP904 7H 80.94 0.22 0.0036 2.44 0.85 -0.68 QTL21_CPC QGpc.HaTR-7H [77]
SNP925 7H 112.46 0.37 0.0210 1.68 0.49 0.41 QTL22_CPC   
SNP930 7H 121.09 0.07 0.00001 4.73 1.57 1.54 QTL23_CPC   
  1. Significant markers associated for CPC with K-model, their MAF, P-value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.