Skip to main content

Table 11 GWAS results for trait crude protein content

From: Genome-wide association studies for agronomical traits in a world wide spring barley collection

SNP Chr Position MAF P-Value -log10 (P) R2 (%) Effect QTL Reference QTL Literature
SNP47 1H 55.49 0.50 0.0044 2.36 0.78 0.74 QTl1_CPC   
SNP97 1H 114.84 0.25 0.0139 1.86 0.56 -0.85 QTL2_CPC   
SNP136 2H 33.74 0.35 0.0310 1.51 0.45 0.39 QTL3_CPC QPc.nab-2H.1;Qcp2a [67, 76]
SNP170 2H 63.53 0.32 0.0190 1.72 0.54     
SNP173 2H 63.53 0.33 0.0115 1.94 0.62 0.72 QTL4_CPC QGpc.StMo-2H.2 [67, 75]
SNP174 2H 63.53 0.41 0.0055 2.26 0.74     
SNP177 2H 63.53 0.32 0.0116 1.94 0.61     
SNP200 2H 74.37 0.25 0.0071 2.15 0.72 -0.56 QTL5_CPC   
SNP205 2H 78.03 0.40 0.0296 1.53 0.47     
SNP226 2H 96.82 0.23 0.0056 2.25 0.66 -0.90 QTL6_CPC QPc.nab-2H.1 [67]
SNP227 2H 96.82 0.19 0.0160 1.80 0.55     
SNP244 2H 116.49 0.24 0.0242 1.62 0.48 -0.47 QTL7_CPC QGpc.HaMo-2H.2 [75]
SNP272 2H 147.94 0.26 0.0103 1.99 0.62 -0.52 QTL8_CPC   
SNP305 3H 47.09 0.16 0.0020 2.70 0.86 -1.466 QTL9_CPC   
SNP322 3H 55.57 0.18 0.0093 2.03 0.64     
SNP357 3H 72.26 0.32 0.0159 1.80 0.51 -0.47 QTL10_CPC   
SNP401 3H 122.14 0.24 0.0062 2.21 0.68 0.60 QTL11_CPC Qcp3a [76]
SNP409 3H 130.82 0.41 0.0146 1.84 0.54     
SNP518 4H 79.58 0.45 0.0006 3.22 1.09 -0.75 QTL12_CPC QGpc.HaTR-4H.2 [77]
SNP531 4H 97.06 0.11 0.0281 1.55 0.45 0.79    
SNP534 4H 101.62 0.16 0.0025 2.60 0.87   QTL13_CPC QGpc.StMo-4H [69]
SNP537 4H 108.70 0.21 0.0016 2.80 0.92     
SNP616 5H 74.78 0.51 0.0107 1.97 0.54 -0.814 QTL14_CP QGpc.HaMo-5H [67, 75]
SNP623 5H 85.93 0.16 0.0082 2.09 0.61     
SNP643 5H 110.26 0.10 0.0055 2.26 0.73 1.52 QTL15_CPC QGpc.DiMo-5H.2 [78]
SNP699 5H 171.66 0.11 0.0219 1.66 0.53   QTL16_CPC   
SNP807 6H 83.89 0.25 0.0020 2.70 0.91 0.67 QTL17_CPC   
SNP844 7H 12.42 0.10 0.0214 1.67 0.51 0.79 QTL18_CPC   
SNP855 7H 38.32 0.35 0.0019 2.72 0.91 -0.86 QTL19_CPC   
SNP860 7H 46.19 0.26 0.0314 1.50 0.45     
SNP871 7H 61.32 0.24 0.0285 1.55 0.46 -0.50 QTL20_CPC QPc.nab-7H [67]
SNP904 7H 80.94 0.22 0.0036 2.44 0.85 -0.68 QTL21_CPC QGpc.HaTR-7H [77]
SNP925 7H 112.46 0.37 0.0210 1.68 0.49 0.41 QTL22_CPC   
SNP930 7H 121.09 0.07 0.00001 4.73 1.57 1.54 QTL23_CPC   
  1. Significant markers associated for CPC with K-model, their MAF, P-value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.
Back to article page

BMC Plant Biology

ISSN: 1471-2229

Contact us