Genome-wide association studies for agronomical traits in a world wide spring barley collection

BMC Plant Biology

Table 6 LD overview for the whole panel and the subgroups of two-rowed and six-rowed barley

		Total pairs	% significant	Significant pairs	Mean r²	Pairs in complete LD	% of pairs in LD > 0.2	Mean of r²> 0.2
Whole panel	total	62222	39.4	24567	0.12	59	13.72	0.36
	0-10 cM	10602	62.2	6554	0.20	59	33.70	0.42
	11-20cM	8028	45.1	3626	0.10	0	10.21	0.29
	21-50 cM	19066	38.3	7310	0.09	0	8.40	0.27
	> 50 cM	24526	28.5	7077	0.08	0	4.00	0.25
2-rowed	total	48803	21.6	10544	0.18	94	23.74	0.43
	0-10 cM	8183	50.0	4098	0.29	94	48.00	0.48
	11-20cM	6244	29.9	1869	0.13	0	13.31	0.30
	21-50 cM	15066	17.2	2601	0.12	0	9.59	0.28
	> 50 cM	19310	10.2	1976	0.10	0	3.81	0.26
6-rowed	total	58356	20.2	11801	0.17	95	22.40	0.36
	0-10 cM	9947	36.8	3661	0.24	95	40.37	0.43
	11-20cM	7439	21.1	1569	0.14	0	18.26	0.27
	21-50 cM	17768	16.9	3016	0.14	0	15.04	0.27
	> 50 cM	23202	15.3	3555	0.13	0	12.14	0.25

LD statistics are given for the total number of locus pairs and for different marker linkage classes (for details see text).

ISSN: 1471-2229