Genome-wide association studies for agronomical traits in a world wide spring barley collection

BMC Plant Biology

Table 7 GWAS results for trait heading date

SNP	Chr	Position	MAF	P-value	-log10(P)	R² (%)	Effect	QTL	Reference QTL	Literature
SNP111	1H	128.14	0.19	0.0032	2.49	0.63	-2.51	QTL1_HD	HvFT3	[61]
SNP119	1H	138.92	0.23	0.0198	1.70	0.33
SNP129	2H	27.29	0.37	0.0099	2.00	0.38
SNP130	2H	28.44	0.36	0.0080	2.10	0. 39	-1.29	QTL2_HD	PpdH1	[62]
SNP133	2H	31.02	0.38	0.0280	1.55	0.39				[61]
SNP135	2H	33.73	0.10	0.0262	1.58	0.51
SNP142	2H	41.66	0.27	0.0096	2.02	0.40
SNP148	2H	53.53	0.34	0.0043	2.37	0.47	-1.37	QTL3_HD
SNP170	2H	63.53	0.32	0.0007	3.10	0.88
SNP174	2H	63.53	0.41	0.0011	2.96	0.68
SNP177	2H	63.53	0.32	0.0013	2.89	0.55		QTL4_HD	HvFT4/eam6	[61, 63, 64]
SNP173	2H	63.53	0.33	0.0033	2.48	0.53
SNP183	2H	66.83	0.44	0.0265	1.58	0.39	-2.32
SNP191	2H	71.12	0.44	0.0043	1.0061	0.0012
SNP196	2H	73.04	0.10	0.0061	2.21	0.65		QTL5_HD	eps2	[62]
SNP199	2H	73.75	0.14	0.0012	2.92	0. 49	2.53
SNP242	2H	115.78	0.39	0.0207	1.68	0. 54	-1.98	QTL6_HD
SNP284	3H	8.23	0.24	0.0111	1.95	0. 42	-1.45	QTL7_HD
SNP340	3H	59.89	0.35	0.0047	2.33	0. 38	1.80	QTL8_HD	HvGI	[61]
SNP520	4H	82.42	0.32	0.0198	1.70	0.47	-1.15	QTL9_HD
SNP543	4H	123.29	0.26	0.0024	2.62	0.67	-1.59	QTL10_HD
SNP559	5H	39.97	0.46	0.0146	1.84	0.32	-1.20	QTL11_HD	HvCO3	[65]
SNP630	5H	100.28	0.20	0.0203	1.69	0.58
SNP635	5H	102.06	0.13	0.0278	1.56	0. 34	-2.02	QTL12_HD
SNP636	5H	103.92	0.28	0.0278	1.56	0. 35
SNP639	5H	108.18	0.38	0.0236	1.63	0.53
SNP728	6H	28.39	0.43	0.0132	1.88	0.28	-1.43	QTL13_HD
SNP778	6H	60.23	0.49	0.0306	1.51	0. 37	-2.15	QTL14_HD
SNP829	6H	124.85	0.33	0.0281	1.55	0. 37	1.52	QTL15_HD
SNP854	7H	37.55	0.36	0.0060	2.22	0.57	2.50	QTL16_HD	HvFT1	[61, 63]
SNP855	7H	38.32	0.35	0.0009	3.01	0.54
SNP875	7H	68.46	0.06	0.0180	1.74	0. 48	-2.33	QTL17_HD
SNP908	7H	84.92	0.35	0.0266	1.58	0. 37	1.66	QTL18_HD	HvCO1	[61, 65]
SNP921	7H	104.78	0.35	0.0131	1.88	0.59	-1.79	QTL19_HD

Significant markers associated for heading date with K-model, corresponding MAF, P value of association, variance explained by marker (R²), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

ISSN: 1471-2229