Genome-wide association studies for agronomical traits in a world wide spring barley collection

BMC Plant Biology

Table 8 GWAS results for trait plant height

Marker	Chr	Position	MAF	P-value	-log10(P)	R² (%)	Effect	QTL	Reference QTL	Literature
SNP122	2H	8.57	0.13	0.0016	2.80	0.94	-5.64	QTL1_PHT
SNP136	2H	33.74	0.35	0.0138	1.86	0.54
SNP137	2H	38.03	0.35	0.0044	2.36	0.84	-5.23	QTL2_PHT	Ph2	[66]
SNP168	2H	59.21	0.16	0.0229	1.64	0.46
SNP171	2H	63.53	0.10	0.0155	1.81	0.51	6.73	QTL3_PHT	HT (marker:B15c)	[67]
SNP175	2H	63.53	0.10	0.0155	1.81	0.51
SNP199	2H	73.75	0.14	0.0224	1.65	0.49	4.72	QTL4_PHT	sdw3	[68]
SNP200	2H	74.37	0.25	0.0162	1.79	0.54
SNP254	2H	130.01	0.20	0.0117	1.93	0.56	-4.57	QTL5_PHT	QHt.StMo-2H.2	[69]
SNP256	2H	131.77	0.28	0.0175	1.76	0.5
SNP295	3H	36.49	0.13	0.0124	1.91	0.55
SNP303	3H	43.23	0.23	0.0083	2.08	0.61	-5.57	QTL6_PHT	QHt.HaMo-3H	[67, 69]
SNP304	3H	46.31	0.35	0.0141	1.85	0.54
SNP312	3H	52.50	0.25	0.0002	3.55	1.15
SNP313	3H	52.50	0.42	0.0220	1.66	0.48	-5.80	QTL7_PHT	uzu	Grain genes database
SNP404	3H	126.27	0.39	0.0129	1.89	0.55	4.11	QTL8_PHT	sdw1/denso	[70, 71]
SNP406	3H	127.10	0.37	0.0061	2.21	0.65
SNP427	3H	155.09	0.06	0.0120	1.92	0.56	-2.68	QTL9_PHT
SNP429	3H	162.15	0.06	0.0053	2.28	0.75
SNP519	4H	80.79	0.18	0.0306	1.51	0.4	3.70	QTL10_PHT	QHei.pil-4H.5	[72]
SNP575	5H	50.27	0.31	0.0028	2.55	0.8	5.30	QTL11_PHT
SNP588	5H	51.30	0.41	0.0159	1.80	0.5
SNP623	5H	85.93	0.16	0.0164	1.79	0.51	4.95	QTL12_PHT
SNP643	5H	110.26	0.10	0.0133	1.88	0.41	-5.58	QTL13_PHT	HT	[71]
SNP654	5H	132.63	0.44	0.0235	1.63	0.46	-4.15	QTL14_PHT	QHei.pil-5H.1	[72]
SNP722	6H	12.54	0.42	0.0229	1.64	0.41	-5.11	QTL15_PHT
SNP724	6H	16.97	0.30	0.0033	2.48	0.8
SNP757	6H	55.36	0.09	0.0060	2.24	0.64	-8.54	QTL16_PHT
SNP766	6H	55.36	0.32	0.0092	2.04	0.6
SNP831	6H	124.85	0.28	0.0038	2.42	0.74	-4.89	QTL17_PHT
SNP882	7H	73.75	0.45	0.0210	1.68	0.46	-4.23	QTL18_PHT	HT	[71]
SNP947	7H	144.45	0.41	0.0301	1.52	0.43	-3.77	QTL19_PHT

Significant markers associated for trait PHT, their MAF, P-value of association, variance explained by marker (R²), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.

ISSN: 1471-2229