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Table 8 GWAS results for trait plant height

From: Genome-wide association studies for agronomical traits in a world wide spring barley collection

Marker Chr Position MAF P-value -log10(P) R2 (%) Effect QTL Reference QTL Literature
SNP122 2H 8.57 0.13 0.0016 2.80 0.94 -5.64 QTL1_PHT   
SNP136 2H 33.74 0.35 0.0138 1.86 0.54     
SNP137 2H 38.03 0.35 0.0044 2.36 0.84 -5.23 QTL2_PHT Ph2 [66]
SNP168 2H 59.21 0.16 0.0229 1.64 0.46     
SNP171 2H 63.53 0.10 0.0155 1.81 0.51 6.73 QTL3_PHT HT (marker:B15c) [67]
SNP175 2H 63.53 0.10 0.0155 1.81 0.51     
SNP199 2H 73.75 0.14 0.0224 1.65 0.49 4.72 QTL4_PHT sdw3 [68]
SNP200 2H 74.37 0.25 0.0162 1.79 0.54     
SNP254 2H 130.01 0.20 0.0117 1.93 0.56 -4.57 QTL5_PHT QHt.StMo-2H.2 [69]
SNP256 2H 131.77 0.28 0.0175 1.76 0.5     
SNP295 3H 36.49 0.13 0.0124 1.91 0.55     
SNP303 3H 43.23 0.23 0.0083 2.08 0.61 -5.57 QTL6_PHT QHt.HaMo-3H [67, 69]
SNP304 3H 46.31 0.35 0.0141 1.85 0.54     
SNP312 3H 52.50 0.25 0.0002 3.55 1.15     
SNP313 3H 52.50 0.42 0.0220 1.66 0.48 -5.80 QTL7_PHT uzu Grain genes database
SNP404 3H 126.27 0.39 0.0129 1.89 0.55 4.11 QTL8_PHT sdw1/denso [70, 71]
SNP406 3H 127.10 0.37 0.0061 2.21 0.65     
SNP427 3H 155.09 0.06 0.0120 1.92 0.56 -2.68 QTL9_PHT   
SNP429 3H 162.15 0.06 0.0053 2.28 0.75     
SNP519 4H 80.79 0.18 0.0306 1.51 0.4 3.70 QTL10_PHT QHei.pil-4H.5 [72]
SNP575 5H 50.27 0.31 0.0028 2.55 0.8 5.30 QTL11_PHT   
SNP588 5H 51.30 0.41 0.0159 1.80 0.5     
SNP623 5H 85.93 0.16 0.0164 1.79 0.51 4.95 QTL12_PHT   
SNP643 5H 110.26 0.10 0.0133 1.88 0.41 -5.58 QTL13_PHT HT [71]
SNP654 5H 132.63 0.44 0.0235 1.63 0.46 -4.15 QTL14_PHT QHei.pil-5H.1 [72]
SNP722 6H 12.54 0.42 0.0229 1.64 0.41 -5.11 QTL15_PHT   
SNP724 6H 16.97 0.30 0.0033 2.48 0.8     
SNP757 6H 55.36 0.09 0.0060 2.24 0.64 -8.54 QTL16_PHT   
SNP766 6H 55.36 0.32 0.0092 2.04 0.6     
SNP831 6H 124.85 0.28 0.0038 2.42 0.74 -4.89 QTL17_PHT   
SNP882 7H 73.75 0.45 0.0210 1.68 0.46 -4.23 QTL18_PHT HT [71]
SNP947 7H 144.45 0.41 0.0301 1.52 0.43 -3.77 QTL19_PHT   
  1. Significant markers associated for trait PHT, their MAF, P-value of association, variance explained by marker (R2), effect of the most significant marker within the QTL interval, name of the QTL, and the reference QTL or gene from literature.