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Table 9 GWAS results for trait thousand grain weight

From: Genome-wide association studies for agronomical traits in a world wide spring barley collection

Marker

Chr

Position

MAF

P-value

-log10(P)

R2 (%)

Effect

QTL

Reference QTL

Literature

SNP48

1H

55.49

0.47

0.0288

1.56

0.34

-2.19

QTL1_TGW

  

SNP56

1H

61.53

0.26

0.0128

1.92

0.39

    

SNP62

1H

66.70

0.25

0.0019

2.77

0.70

2.59

QTL2_TGW

vrs 3

[60]

SNP68

1H

72.43

0.09

0.0263

1.60

0.37

    

SNP76

1H

87.62

0.21

0.0225

1.67

0.38

    

SNP78

1H

88.23

0.26

0.0019

2.79

0.69

2.29

QTL3_TGW

  

SNP81

1H

92.04

0.28

0.0208

1.70

0.38

    

SNP137

2H

38.03

0.35

0.0259

1.61

0.40

-1.20

QTL4_TGW

  

SNP171

2H

63.53

0.10

0.006

2.26

0.50

    

SNP174

2H

63.53

0.41

0.029

1.55

0.35

2.27

QTL5_TGW

QTgw.pil-2H.2

[67, 72]

SNP175

2H

63.53

0.10

0.006

2.26

0.50

    

SNP210

2H

82.75

0.36

0.0081

2.13

0.51

    

SNP215

2H

86.63

0.32

0.0267

1.59

0.38

1.33

QTL6_TGW

vrs1

[60]

SNP245

2H

117.91

0.42

0.0084

2.11

0.51

-1.66

QTL7_TGW

  

SNP262

2H

139.65

0.31

0.0091

2.07

0.49

-1.62

QTL8_TGW

  

SNP305

3H

47.09

0.16

0.0225

1.67

0.39

3.01

QTL9_TGW

  

SNP385

3H

98.49

0.37

0.0131

1.91

0.45

1.94

QTL10_TGW

 

[60]

SNP395

3H

111.42

0.37

0.0302

1.54

0.36

-1.35

QTL11_TGW

QTgw.S42-2H.a

[73]

SNP458

4H

26.19

0.34

0.0224

1.67

0.40

1.75

QTL12_TGW

int-c

[29, 60]

SNP460

4H

26.66

0.26

0.0034

2.52

0.63

    

SNP467

4H

40.36

0.33

0.0007

3.21

0.74

    

SNP469

4H

40.36

0.17

0.0006

3.28

0.82

2.52

QTL13_TGW

QTgw.pil-4H.3

[72]

SNP643

5H

110.26

0.10

0.0312

1.52

0.28

-3.00

QTL14_TGW

QTgw.pil-5H.2

[72]

SNP663

5H

142.2

0.16

0.0004

3.45

0.87

    

SNP664

5H

142.2

0.16

0.0002

3.79

1.00

4.47

QTL15_TGW

QGwe.TaER-5H.2

[74]

SNP666

5H

142.2

0.15

0.0012

3.00

0.74

    

SNP709

5H

187.38

0.28

0.0082

2.12

0.50

2.02

QTL16_TGW

QTgw.pil-5H.4

[72]

SNP739

6H

43.83

0.08

0.016

1.82

0.43

    

SNP740

6H

44.77

0.42

0.0041

2.43

0.6

    

SNP741

6H

44.77

0.41

0.0064

2.23

0.55

-1.91

QTL17_TGW

  

SNP770

6H

55.94

0.31

0.003

2.58

0.54

    

SNP851

7H

34.82

0.43

0.0056

2.29

0.52

  

QGwe.HaTR-

 

SNP854

7H

37.55

0.36

0.0277

1.58

0.32

-1.88

QTL18_TGW

7H.1

[75]

SNP919

7H

88.65

0.13

0.0164

1.81

0.43

3.01

QTL19_TGW

  

SNP934

7H

129.91

0.24

0.0048

2.36

0.59

1.84

QTL20_TGW

  

SNP944

7H

143.68

0.12

0.0315

1.52

0.27

-1.37

QTL21_TGW

QTw.HaTR-7H.1

[72]

  1. Significant markers associated for TGW, their MAF, P-value of association, variance explained by marker (R2), effect of most significant marker within the QTL interval, name of the QTL, and reference QTL or gene from literature.