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Table 9 GWAS results for trait thousand grain weight

From: Genome-wide association studies for agronomical traits in a world wide spring barley collection

Marker Chr Position MAF P-value -log10(P) R2 (%) Effect QTL Reference QTL Literature
SNP48 1H 55.49 0.47 0.0288 1.56 0.34 -2.19 QTL1_TGW   
SNP56 1H 61.53 0.26 0.0128 1.92 0.39     
SNP62 1H 66.70 0.25 0.0019 2.77 0.70 2.59 QTL2_TGW vrs 3 [60]
SNP68 1H 72.43 0.09 0.0263 1.60 0.37     
SNP76 1H 87.62 0.21 0.0225 1.67 0.38     
SNP78 1H 88.23 0.26 0.0019 2.79 0.69 2.29 QTL3_TGW   
SNP81 1H 92.04 0.28 0.0208 1.70 0.38     
SNP137 2H 38.03 0.35 0.0259 1.61 0.40 -1.20 QTL4_TGW   
SNP171 2H 63.53 0.10 0.006 2.26 0.50     
SNP174 2H 63.53 0.41 0.029 1.55 0.35 2.27 QTL5_TGW QTgw.pil-2H.2 [67, 72]
SNP175 2H 63.53 0.10 0.006 2.26 0.50     
SNP210 2H 82.75 0.36 0.0081 2.13 0.51     
SNP215 2H 86.63 0.32 0.0267 1.59 0.38 1.33 QTL6_TGW vrs1 [60]
SNP245 2H 117.91 0.42 0.0084 2.11 0.51 -1.66 QTL7_TGW   
SNP262 2H 139.65 0.31 0.0091 2.07 0.49 -1.62 QTL8_TGW   
SNP305 3H 47.09 0.16 0.0225 1.67 0.39 3.01 QTL9_TGW   
SNP385 3H 98.49 0.37 0.0131 1.91 0.45 1.94 QTL10_TGW   [60]
SNP395 3H 111.42 0.37 0.0302 1.54 0.36 -1.35 QTL11_TGW QTgw.S42-2H.a [73]
SNP458 4H 26.19 0.34 0.0224 1.67 0.40 1.75 QTL12_TGW int-c [29, 60]
SNP460 4H 26.66 0.26 0.0034 2.52 0.63     
SNP467 4H 40.36 0.33 0.0007 3.21 0.74     
SNP469 4H 40.36 0.17 0.0006 3.28 0.82 2.52 QTL13_TGW QTgw.pil-4H.3 [72]
SNP643 5H 110.26 0.10 0.0312 1.52 0.28 -3.00 QTL14_TGW QTgw.pil-5H.2 [72]
SNP663 5H 142.2 0.16 0.0004 3.45 0.87     
SNP664 5H 142.2 0.16 0.0002 3.79 1.00 4.47 QTL15_TGW QGwe.TaER-5H.2 [74]
SNP666 5H 142.2 0.15 0.0012 3.00 0.74     
SNP709 5H 187.38 0.28 0.0082 2.12 0.50 2.02 QTL16_TGW QTgw.pil-5H.4 [72]
SNP739 6H 43.83 0.08 0.016 1.82 0.43     
SNP740 6H 44.77 0.42 0.0041 2.43 0.6     
SNP741 6H 44.77 0.41 0.0064 2.23 0.55 -1.91 QTL17_TGW   
SNP770 6H 55.94 0.31 0.003 2.58 0.54     
SNP851 7H 34.82 0.43 0.0056 2.29 0.52    QGwe.HaTR-  
SNP854 7H 37.55 0.36 0.0277 1.58 0.32 -1.88 QTL18_TGW 7H.1 [75]
SNP919 7H 88.65 0.13 0.0164 1.81 0.43 3.01 QTL19_TGW   
SNP934 7H 129.91 0.24 0.0048 2.36 0.59 1.84 QTL20_TGW   
SNP944 7H 143.68 0.12 0.0315 1.52 0.27 -1.37 QTL21_TGW QTw.HaTR-7H.1 [72]
  1. Significant markers associated for TGW, their MAF, P-value of association, variance explained by marker (R2), effect of most significant marker within the QTL interval, name of the QTL, and reference QTL or gene from literature.