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Table 1 Cis-elements enriched in promoters of RGL2-up-regulated genes

From: Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana

Consensus sequence

Putative cis-element1

Associated type of transcription factor

%2

TIC3

e-value

TTTTTCAA

Pyrimidine box-like / PE1/AT-hook element-like / GT element-like

GAMYB / PF1, GT1 / GT3b

46

14.53

2e-005

AAAAAAAAAG

AAAAG element / PE1/AT-hook element-like

Dof1, Dof4, Dof11, Dof16 / PF1

42

19.02

0e+000

AATAAAGA

TAAAG element

Dof4, Dof11, Dof16

37

14.50

0e+000

TCTCTCTTT

GAGA element-like / TCA-1 binding site

GAGA-binding factor BBR / TCA-1

32

17.00

2e-005

TATTTGTTT

GARE-like / AuxRE-like

GAMYB / ARF1

31

16.08

0e+000

TTAGTTTT

Myb box-like

MYB1

29

15.03

2e-005

TTTGTTTTC

Pyrimidine box-like/GARE / GT element-like / AuxRE-like

GAMYB / HD PR2 / ARF1

27

16.23

0e+000

TTTCTTTG

TCA-1 binding site

TCA-1 (tobacco nuclear protein 1)

26

16.00

0e+000

TGCTTCTC

CAMTA3 binding site / AuxRE-like / IDE1 (iron-deficiency-responsive element 1)

CAMTA3 / ARF1

26

13.44

3e-005

AAAAAAATG

AT hook/PE1 element-like

PF1 / DBP

23

16.45

2e-005

CTTATAT

TATA-box

TBP

21

15.10

0e+000

CAAGAATG

AAGAA motif

Dof2

20

14.03

0e+000

GATTTTGTT

GARE-like

GAMYB

20

16.05

3e-005

AAGACAAA

GARE-like

GAMYB

20

16.00

0e+000

  1. 1Homology with motifs identified in Arabidopsis and other plant species (TRANSFAC, PLACE and AGRIS databases).
  2. 2Percent occurrence in critical promoters relative to background sequences.
  3. 3Total Information Content.
  4. Promoter motifs identified in promoters of RGL2-UP, with consensus sequence, name and associated transcription factors.