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Table 2 Cis-elements enriched in promoters of RGL2-down-regulated genes

From: Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana

Consensus sequence

Putative of cis-element1

Associated type of transcription factor

%2

TIC3

e-value

TCCAAAAA

AT-hook/PE1 element-like / L-box/UV-B responsive element-like

PF1

38

14.52

2e-005

GTTTTTTTT

GARE-like / AT-hook/PE1 element-like

GAMYB / PF1

34

18.00

0e+000

TATAACAA

MYB box-like / GARE-like

GAMYB

33

14.51

0e+000

TTTATTTTA

Box III-like

GT-1

32

17.13

2e-005

AAATTTCA

GT element-like

GT-1

30

15.01

0e+000

TTTCTTTG

TCA-1 (tobacco nuclear protein 1) binding site / T-box-like

TCA-1

23

16.00

2e-005

AGAAAGTG

phyA-induced motifs / Sucrose Responsive Element (SURE)-like

 

23

15.00

0e+000

AATTATTTA

TATA-box

TBP

21

16.58

2e-005

ATTATGAA

JASE1/JASE2-like

AP2/ERF (jasmonate inducible)

20

15.00

2e-005

  1. 1Homology with motifs identified in Arabidopsis and other plant species (TRANSFAC, PLACE and AGRIS databases).
  2. 2Percent occurrence in critical promoters relative to background sequences.
  3. 3Total Information Content.
  4. Promoter motifs identified in promoters of RGL2-DOWN, with consensus sequence, name and associated transcription factors.