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Table 1 Statistics of small RNA sequences from the Hevea brasiliensis small RNA library

From: Identification of novel microRNAs in Hevea brasiliensisand computational prediction of their targets

Stress small RNA library

Sequence number

Analysis

read sequences

4,223,792

 

clean sequences

2,378,135

Solexa sequencing

unique clean sequences of small RNA

670,645

 

no hit

629,795

 

hit, unknown

26,721

 

coding mRNA

6,618

 

transposons/transposable element

6,800

 

rRNA

399

Blast against Arabidopsis

pseudo mRNA

138

genome

ncRNA

73

 

miRNA

57

 

tRNA

39

 

sn/snoRNA

5

 

no hit

652,215

 

hit

18,430

Blast against PMRD

conserved miRNA family

48

 

putative novel miRNA family

10

LeARN pipeline