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Table 3 Frequency of single-nucleotide mutation and of a combination of 5' deletion and 3' uridylation (-1 + UU) for four miRNA families from Hevea

From: Identification of novel microRNAs in Hevea brasiliensisand computational prediction of their targets

Family name in Arabidopsis

Single-nucleotide modification

-1 + UU modification

 

Arabidopsis

Hevea

Arabidopsis

Hevea

AtmiR156

G-A: 14.091%

A-U: 49.382%

A-C: 3.571%

yes

no

 

G-A: 10.407%

G-A: 2.127%

  

AtmiR159a

G-A: 8.597%

G-A: 4.166%

no

no

 

G-A: 5.882%

G-C: 2.127%

G-U: 1.398%

  

AtmiR164a

G-A: 3.967%

G-A: 7.692%

no

no

AtmiR172a

G-U: 0.599%

G-U: 6.153%

A-U: 7.692%

C-U: 7.692%

no

no

  1. Sites of post-transcriptional modification identified in Arabidopsis [50] were analysed in the Hevea small RNA dataset. Only sequences present at > 0.5% are listed