From: Identification of novel microRNAs in Hevea brasiliensisand computational prediction of their targets
MiRNA family | GO term | Predicted target function | mfe kcal/mol | Target name |
---|---|---|---|---|
 | Transcription regulation activity | Squamosa promoter-binding protein | -45.50 | CL2120Contig2 |
HbmiR156/157 | Â | APETALA2-like protein | -24.41 | hevea_454_rep_c24306 |
 | Antioxidant activity | flavonoid 3',5'-hydroxylase | -26.53 | CL2495Contig2 |
 |  | AKR (aldo keto reductase) | -32.90 | hevea_454_rep_c15059 |
 | Transcription regulation activity | APETALA2-like protein | -27.80 | hevea_454_rep_c17780 |
 |  | sarcosine oxidase | -29.70 | CL11607Contig1 |
 |  | serine/threonine protein kinase | -21.39 | CL11Contig15 |
 |  | cinnamoyl-CoA reductase | -32.88 | CL1Contig7212 |
 |  | CuZnSOD peroxysomal | -32.14 | CL1Contig3818 |
HbmiR159 | Antioxidant activity | ABC transporter C family | -28.02 | CL1Contig3612 |
 |  | cytochrome b6f complex | -36.18 | CL1Contig475 |
 |  | TATA box binding protein | -29.38 | CL1Contig760 |
 |  | oxidoreductase family protein | -32.88 | CL781Contig2 |
 |  | ATP Synthase | -27.31 | CL1613Contig1 |
 |  | HMG-CoA_reductase (HMGR) | -36.39 | CL8048Contig1 |
 |  | 6-phosphogluconate dehydrogenase family protein | -33.44 | CL1Contig1588 |
HbmiR319 | Antioxidant activity | ferritin putative | -35.86 | CL1Contig17258 |
HbmiR160 | Transcription regulation activity | ARF | -52.20 | CL6582Contig1 |
 | Antioxidant activity | FAD/NAD(P)-binding oxidoreductase-like protein | -23.10 | hevea_454_rep_c15774 |
HbmiR162 | Â | ABC transporter C family | -26.47 | hevea_454_rep_c28843 |
 | Response to stimulus | zinc finger family protein | -31.40 | hevea_454_rep_c20758 |
HbmiR164 | Transcription regulation activity | NAC-domain protein | -44.12 | hevea_454_rep_c10543 |
 |  | amine oxidase | -32.67 | CL21795Contig1 |
 | Transcription regulation activity | NAC-domain protein | -32.43 | CL7990Contig1 |
 |  | PHAVOLUTA-like HD-ZIPIII protein | -46.68 | hevea_454_rep_c12680 |
HbmiR165/166 | Antioxidant activity | LRR protein | -30.08 | hevea_454_c28164 |
 | Antioxidant activity/Response to stimulus | malate deshydrogenase | -38.95 | hevea_454_rep_c94776 |
 | Response to stimulus | abscisic acid insensitive protein | -36.33 | hevea_454_rep_c69184 |
Hbmir167 | Response to stimulus | cap binding protein | -33.60 | hevea_454_c94262 |
 | Transcription regulation activity | CCAAT-binding transcription factor | -32.79 | CL435Contig5 |
HbmiR169 | Â | Laccase | -26.51 | CL1Contig13876 |
 | Antioxidant activity | aldehyde dehydrogenase | -26.56 | CL1Contig16398 |
 |  | annexin-like protein | -32.71 | CL1Contig2060 |
HbmiR170 | Transcription regulation activity | GRAS domain-containing protein | -37.90 | hevea_454_rep_c11063 |
 | Transcription regulation activity | GRAS domain-containing protein | -39.50 | CL3142Contig4 |
HbmiR171 | Â | ribonucleoside-diphosphate reductase | -26.99 | CL1031Contig2 |
 | Antioxidant activity | oxophytodienoate reductase (OPR) | -27.23 | CL3790Contig2 |
 |  | glyceraldehyde-3-phosphate dehydrogenase | -24.88 | CL150Contig1 |
 | Transcription regulation activity | APETALA2-like protein | -24.25 | hevea_454_rep_c45080 |
 |  | HD-ZIP protein | -33.63 | hevea_454_rep_c13497 |
HbmiR172 | Antioxidant activity | NAD(P)H-quinone oxidoreductase | -24.54 | hevea_454_rep_c13256 |
 |  | CLAVATA1 putative | -31.73 | hevea_454_rep_c2026 |
 |  | Squalene monooxygenase | -29.04 | hevea_454_rep_c32943 |
 | Response to stimulus | syntaxin | -31.00 | hevea_454_c68550 |
 |  | aspartate aminotransferase | -33.44 | hevea_454_rep_c4007 |
HbmiR2111 | Antioxidant activity | laccase | -26.57 | hevea_454_rep_c5912 |
HbmiR2910 | Antioxidant activity | 2OG-Fe(II) -dependent-oxygenase-like protein | -30.83 | hevea_454_rep_c1596 |
 |  | ketol-acid reductoisomerase | -31.31 | hevea_454_rep_c5152 |
HbmiR2914 | Antioxidant activity | FAD Binding domain-containing protein | -58.64 | hevea_454_rep_c15793 |
 |  | Rboh | -31.88 | hevea_454_rep_c23550 |
 | Transcription regulation activity | Heat shock protein | -30.89 | CL11591Contig1 |
Hbmir390 | Â | WRKY transcription factor | -33.09 | CL338Contig4 |
 | Antioxidant activity | Phosphoenolpyruvate carboxylase | -19.81 | CL362Contig2 |
 |  | hydroxy-acid oxidase | -23.58 | CL8468Contig1 |
HbmiR393 | Transcription regulation activity | APETALA2-like protein | -22.79 | hevea_454_c60993 |
 | Transcription regulation activity | APETALA2-like protein | -24.47 | hevea_454_c37716 |
Hbmir395 | Antioxidant activity | 2OG-Fe(II) -dependent-oxygenase-like protein | -30.00 | hevea_454_rep_c21129 |
 | Transcription regulation activity | APETALA2-like protein | -22.40 | hevea_454_rep_c13430 |
 |  | Transparent TESTA protein | -34.16 | hevea_454_rep_c14652 |
 |  | GRAS domain-containing protein | -27.01 | hevea_454_rep_c8477 |
HbmiR396 | Antioxidant activity | zinc finger family protein | -31.84 | hevea_454_c64598 |
 |  | Lignin-forming anionic peroxidase | -26.08 | hevea_454_rep_c20896 |
 | Antioxidant activity/Response to stimulus | Glutamyl-tRNA reductase | -35.76 | hevea_454_rep_c14169 |
 |  | fatty acyl-coenzyme A reductases (FAR) | -25.41 | hevea_454_rep_c16435 |
 |  | cysteine protease | -33.18 | CL1Contig374 |
HbmiR397 | Antioxidant activity | laccase | -40.97 | hevea_454_c73766 |
 | Antioxidant activity | 4-coumarate-coa ligase | -37.60 | hevea_454_rep_c6270 |
HbmiR398 | Â | CuZnSOD chloroplastique | -37.30 | CL4308Contig2 |
 | Response to stimulus | HVA22-like protein | -36.03 | hevea_454_rep_c27557 |
 | Transcription regulation activity | APETALA2-like protein | -28.43 | hevea_454_rep_c64305 |
 |  | serine/threonine protein kinase | -32.93 | CL23251Contig1 |
 |  | Heat shock protein | -26.98 | CL530Contig7 |
 |  | cytochrome P450 | -37.63 | CL1Contig8196 |
HbmiR408 | Â | enolase | -42.49 | CL5843Contig1 |
 | Antioxidant activity | ribonucleoside-diphosphate reductase | -37.34 | CL1031Contig6 |
 |  | thioredoxin reductase | -32.80 | CL1401Contig3 |
 |  | gibberellin 20-oxidase | -37.63 | CL1Contig12612 |
 |  | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | -30.00 | CL1Contig6885 |
HbmiR444 | Transcription regulation activity | WRKY | -36.82 | hevea_454_rep_c7550 |
 |  | Heat shock protein | -29.45 | CL2547Contig3 |
HbmiR476 | Antioxidant activity | Rboh | -27.76 | CL1Contig1292 |
 |  | cationic peroxidase 2 precursor | -31.63 | CL257Contig2 |
HbmiR535 | Antioxidant activity | LRR protein | -29.18 | hevea_454_c18080 |
HbmiR827 | Response to stimulus | fructose-bisphosphate aldolase | -26.90 | hevea_454_rep_c59114 |
HbmiR828 | Transcription regulation activity | MYB class transcription factor | -26.76 | hevea_454_rep_c48615 |