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Table 6 List of predicted targets for conserved miRNAs involved in response to stimulus, and in antioxidant and transcription regulator activities according to GO terms

From: Identification of novel microRNAs in Hevea brasiliensisand computational prediction of their targets

MiRNA family

GO term

Predicted target function

mfe kcal/mol

Target name

 

Transcription regulation activity

Squamosa promoter-binding protein

-45.50

CL2120Contig2

HbmiR156/157

 

APETALA2-like protein

-24.41

hevea_454_rep_c24306

 

Antioxidant activity

flavonoid 3',5'-hydroxylase

-26.53

CL2495Contig2

  

AKR (aldo keto reductase)

-32.90

hevea_454_rep_c15059

 

Transcription regulation activity

APETALA2-like protein

-27.80

hevea_454_rep_c17780

  

sarcosine oxidase

-29.70

CL11607Contig1

  

serine/threonine protein kinase

-21.39

CL11Contig15

  

cinnamoyl-CoA reductase

-32.88

CL1Contig7212

  

CuZnSOD peroxysomal

-32.14

CL1Contig3818

HbmiR159

Antioxidant activity

ABC transporter C family

-28.02

CL1Contig3612

  

cytochrome b6f complex

-36.18

CL1Contig475

  

TATA box binding protein

-29.38

CL1Contig760

  

oxidoreductase family protein

-32.88

CL781Contig2

  

ATP Synthase

-27.31

CL1613Contig1

  

HMG-CoA_reductase (HMGR)

-36.39

CL8048Contig1

  

6-phosphogluconate dehydrogenase family protein

-33.44

CL1Contig1588

HbmiR319

Antioxidant activity

ferritin putative

-35.86

CL1Contig17258

HbmiR160

Transcription regulation activity

ARF

-52.20

CL6582Contig1

 

Antioxidant activity

FAD/NAD(P)-binding oxidoreductase-like protein

-23.10

hevea_454_rep_c15774

HbmiR162

 

ABC transporter C family

-26.47

hevea_454_rep_c28843

 

Response to stimulus

zinc finger family protein

-31.40

hevea_454_rep_c20758

HbmiR164

Transcription regulation activity

NAC-domain protein

-44.12

hevea_454_rep_c10543

  

amine oxidase

-32.67

CL21795Contig1

 

Transcription regulation activity

NAC-domain protein

-32.43

CL7990Contig1

  

PHAVOLUTA-like HD-ZIPIII protein

-46.68

hevea_454_rep_c12680

HbmiR165/166

Antioxidant activity

LRR protein

-30.08

hevea_454_c28164

 

Antioxidant activity/Response to stimulus

malate deshydrogenase

-38.95

hevea_454_rep_c94776

 

Response to stimulus

abscisic acid insensitive protein

-36.33

hevea_454_rep_c69184

Hbmir167

Response to stimulus

cap binding protein

-33.60

hevea_454_c94262

 

Transcription regulation activity

CCAAT-binding transcription factor

-32.79

CL435Contig5

HbmiR169

 

Laccase

-26.51

CL1Contig13876

 

Antioxidant activity

aldehyde dehydrogenase

-26.56

CL1Contig16398

  

annexin-like protein

-32.71

CL1Contig2060

HbmiR170

Transcription regulation activity

GRAS domain-containing protein

-37.90

hevea_454_rep_c11063

 

Transcription regulation activity

GRAS domain-containing protein

-39.50

CL3142Contig4

HbmiR171

 

ribonucleoside-diphosphate reductase

-26.99

CL1031Contig2

 

Antioxidant activity

oxophytodienoate reductase (OPR)

-27.23

CL3790Contig2

  

glyceraldehyde-3-phosphate dehydrogenase

-24.88

CL150Contig1

 

Transcription regulation activity

APETALA2-like protein

-24.25

hevea_454_rep_c45080

  

HD-ZIP protein

-33.63

hevea_454_rep_c13497

HbmiR172

Antioxidant activity

NAD(P)H-quinone oxidoreductase

-24.54

hevea_454_rep_c13256

  

CLAVATA1 putative

-31.73

hevea_454_rep_c2026

  

Squalene monooxygenase

-29.04

hevea_454_rep_c32943

 

Response to stimulus

syntaxin

-31.00

hevea_454_c68550

  

aspartate aminotransferase

-33.44

hevea_454_rep_c4007

HbmiR2111

Antioxidant activity

laccase

-26.57

hevea_454_rep_c5912

HbmiR2910

Antioxidant activity

2OG-Fe(II) -dependent-oxygenase-like protein

-30.83

hevea_454_rep_c1596

  

ketol-acid reductoisomerase

-31.31

hevea_454_rep_c5152

HbmiR2914

Antioxidant activity

FAD Binding domain-containing protein

-58.64

hevea_454_rep_c15793

  

Rboh

-31.88

hevea_454_rep_c23550

 

Transcription regulation activity

Heat shock protein

-30.89

CL11591Contig1

Hbmir390

 

WRKY transcription factor

-33.09

CL338Contig4

 

Antioxidant activity

Phosphoenolpyruvate carboxylase

-19.81

CL362Contig2

  

hydroxy-acid oxidase

-23.58

CL8468Contig1

HbmiR393

Transcription regulation activity

APETALA2-like protein

-22.79

hevea_454_c60993

 

Transcription regulation activity

APETALA2-like protein

-24.47

hevea_454_c37716

Hbmir395

Antioxidant activity

2OG-Fe(II) -dependent-oxygenase-like protein

-30.00

hevea_454_rep_c21129

 

Transcription regulation activity

APETALA2-like protein

-22.40

hevea_454_rep_c13430

  

Transparent TESTA protein

-34.16

hevea_454_rep_c14652

  

GRAS domain-containing protein

-27.01

hevea_454_rep_c8477

HbmiR396

Antioxidant activity

zinc finger family protein

-31.84

hevea_454_c64598

  

Lignin-forming anionic peroxidase

-26.08

hevea_454_rep_c20896

 

Antioxidant activity/Response to stimulus

Glutamyl-tRNA reductase

-35.76

hevea_454_rep_c14169

  

fatty acyl-coenzyme A reductases (FAR)

-25.41

hevea_454_rep_c16435

  

cysteine protease

-33.18

CL1Contig374

HbmiR397

Antioxidant activity

laccase

-40.97

hevea_454_c73766

 

Antioxidant activity

4-coumarate-coa ligase

-37.60

hevea_454_rep_c6270

HbmiR398

 

CuZnSOD chloroplastique

-37.30

CL4308Contig2

 

Response to stimulus

HVA22-like protein

-36.03

hevea_454_rep_c27557

 

Transcription regulation activity

APETALA2-like protein

-28.43

hevea_454_rep_c64305

  

serine/threonine protein kinase

-32.93

CL23251Contig1

  

Heat shock protein

-26.98

CL530Contig7

  

cytochrome P450

-37.63

CL1Contig8196

HbmiR408

 

enolase

-42.49

CL5843Contig1

 

Antioxidant activity

ribonucleoside-diphosphate reductase

-37.34

CL1031Contig6

  

thioredoxin reductase

-32.80

CL1401Contig3

  

gibberellin 20-oxidase

-37.63

CL1Contig12612

  

4-hydroxy-3-methylbut-2-enyl diphosphate reductase

-30.00

CL1Contig6885

HbmiR444

Transcription regulation activity

WRKY

-36.82

hevea_454_rep_c7550

  

Heat shock protein

-29.45

CL2547Contig3

HbmiR476

Antioxidant activity

Rboh

-27.76

CL1Contig1292

  

cationic peroxidase 2 precursor

-31.63

CL257Contig2

HbmiR535

Antioxidant activity

LRR protein

-29.18

hevea_454_c18080

HbmiR827

Response to stimulus

fructose-bisphosphate aldolase

-26.90

hevea_454_rep_c59114

HbmiR828

Transcription regulation activity

MYB class transcription factor

-26.76

hevea_454_rep_c48615