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Table 3 QTLs for tocopherols in K22/CI7 population and related candidate genes

From: Dissecting tocopherols content in maize (Zea mays L.), using two segregating populations and high-density single nucleotide polymorphism markers

Trait

Populations

Chr

QTLa

PKb(cM)

Marker* interval

Genetic interval (cM)

Physical intervalc (Mb)

LOD

Ad

De

R2f (%)

Candidate gene

γT

09BJF2:3

2

qc2-1

25.91

PZB00901.3-PZA03228.4

24.02-54.47

9.4-20.1

4.33

−1.84

−0.18

5.99

 
  

5

qc5-2

67.6

PZA01327.1-PHM16854.3

62.04-77.24

15.1-35.3

11.84

−3.9

0.58

17.61

 
  

5

qc5-3

183.2

PHM3612.19-PHM13639.13

196.03-207.23

213.3-215.8

3.98

1.91

−2.53

5.16

 
  

7

qc7-1

43.5

PZA03149.4-PZA02643.1

48.86-62.83

108.8-134.1

6.12

2.85

0.37

8.83

 
 

09HNF2:4

5

qc5-4

57.1

PZA01371.1-PZA01327.1

43.04-62.04

8.3-15.1

4.97

−2.81

−0.68

11.01

 
  

5

qc5-5

93.5

PZA00067.10-PZA00148.3

109.1-115.8

145.9-164.7

10.18

−2.56

−2.95

17.33

 
 

10HBF2:4

5

qc5-2

67.6

PZA01327.1-PHM16854.3

62.04-77.24

15.1-35.3

15.82

−2.66

0.67

25.02

 
  

5

qc5-1

159.7

PZA03161.1-PZA00545.26

144.6-177.68

186.4-207.7

5.53

1.12

0.31

7.75

VTE4

  

6

qc6-1

6.81

PHM15961.13-PZA03069.8

7.0-25.9

9.5-83.0

3.82

−1.22

0.21

5.32

 

αT

09BJF2:3

1

qc1-1

75.4

PHM2130.29-PHM1950.71

97.59-104.09

55.5-67.8

3.97

−1.05

0.79

3.88

 
  

5

qc5-2

59.1

PZA01327.1-PZB00869.4

62.04-74.57

15.1-33.1

5.3

−1.18

0.23

6.19

 
  

5

qc5-1

150.8

PZA00352.23-PZA02060.1

152.75-166.18

191.6-203.2

24

−2.23

−0.08

29.63

VTE4

  

6

qc6-2

77.6

PZA02262.3-PZB01308.2

87.7-95.2

134.9-144.6

4.66

−0.79

−0.29

4.66

 
 

09HNF2:4

5

qc5-2

67.6

PZA03226.3-PZA02207.1

67.14-79.77

20.2-49.9

4.13

−1.57

0.11

6.11

 
  

5

qc5-1

150.8

PZA00352.23-PZA02060.1

152.75-166.18

191.6-203.2

12.26

−2.49

0.35

20.06

VTE4

 

10HBF2:4

1

qc1-1

66.1

PZA00081.18-PZA03189.4

85.05-101.69

45.5-64.2

4.11

−1.04

−0.39

5.48

 
  

5

qc5-2

69.1

PZA01327.1-PHM16854.3

62.04-77.24

15.1-35.3

14.64

−2.73

−0.16

18.17

 
  

5

qc5-1

149.5

PZA00352.23-PZA02060.1

152.75-166.18

191.6-203.2

7.87

−1.85

−0.16

9.84

VTE4

TT

09BJF2:3

1

qc1-1

68.1

PZA00081.18-PHM1932.51

85.05-118.11

45.5-120

5.27

−3.2

1.85

7.07

 
  

2

qc2-2

20.91

PHM12952.13-PZB00901.4

12.9-25.32

4.9-9.4

4.09

−1.64

−1.05

5.99

 
  

5

qc5-4

54.1

PZA01371.1-PZA01327.1

43.04-62.04

8.3-15.1

6.49

−3.56

1.63

9.53

 
  

5

qc5-2

67.6

PZA02113.1-PHM13675.17

72.97-90.34

31.0-67.5

12.49

−4.6

0.48

16.87

 
  

5

qc5-1

150.8

PZA00352.23-PZA02060.1

152.75-166.18

191.6-203.2

4.34

−0.66

−2.21

5.37

VTE4

  

7

qc7-1

41.6

PZA03149.4-PZA02643.1

48.86-62.83

108.8-134.1

5.31

2.61

1.11

6.9

 
 

09HNF2:4

5

qc5-2

67.6

PZA01327.1-PHM13675.17

62.04-90.34

15.1-67.5

14.89

−7.05

−0.89

26.51

 
 

10HBF2:4

5

qc5-2

63.9

PZA01327.1-PZA02207.1

62.04-79.77

15.1-49.9

11.24

−5.35

0.93

15.47

 

α/γ

09BJF2:3

5

qc5-2

57.1

PZA01327.1-PHM2769.43

62.04-83.27

15.1-58.5

6.79

0.28

−0.08

9.17

 
  

6

qc6-2

59.2

PZA01729.1-PZA02328.5

60.5-76.8

123.7-137.1

4.85

−0.23

0.17

8.72

 
  

8

qc8-1

69.9

PHM934.19-PZA02011.1

69.68-82.39

118.2-141.6

4.17

−0.14

−0.06

5.51

 
 

09HNF2:4

5

qc5-2

66

PZA03298.1-PHM16854.3

68.87-77.24

21.9-35.3

5.75

0.54

0.12

10.67

 
  

5

qc5-1

145.5

PZA02751.1-PZA02513.1

151.05-165.68

190.7-203.3

9.08

−0.51

−0.28

18.37

VTE4

 

10HBF2:4

5

qc5-2

67.6

PZA01327.1-PHM2769.43

62.04-83.27

15.1-58.5

10.52

0.74

−0.25

12.65

 
  

5

qc5-1

159.7

PZA00352.23-PZA02015.11

152.75-180.48

191.6-208.3

19.32

−0.81

−0.11

26.03

VTE4

  

6

qc6-2

67.5

PZA00473.5-PZA02262.3

60.4-87.7

124.1-134.9

6.05

−0.56

0.3

8.29

 
  1. a the QTL name which were defined only in our research; b the peak position with the highest LOD in the K22/CI7 map; c the physical distance from the website (http://www.panzea.org/,%20B73_version%205a.60); d additive effect of the corresponding QTL, A; e dominance effect of the corresponding QTL, D; f the ratio of phenotypic variance can be explained by the QTL; * the physical position of these markers can be obtained from the website (http://www.panzea.org/,%20B73_version%205a.60);
  2. Note: the effect of the alleles assumes that the favorable allele came from K22.