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Table 1 Group and sub-group of consensus specific conserved amino acids motifs

From: The family of DOF transcription factors in Brachypodium distachyon: phylogenetic comparison with rice and barley DOFs and expression profiling

Motifa

E-value

Multilevel consensous sequenceb

1

3.3e-3898

CPRCDST[ND]TKFCY[YF]NNY[SN]LSQPR[HY]FC[KR][AT]CRRYWT[KRA]GG[AS]LRNVPVGGG[CR]R[KR]

3

1.0e-081

[GAD][DA][GAS][GLA][IF]KLFG[KR][VT]I[PT][LVP][PQ]

4

1.9e-054

[ALP][PRL][VAFL][LM][QHK][AG]NP[AV]A[LF][ST]RS[QV][ST]FQE

5

2.0e-040

GA[FL]SAMELLRSTGCY[MV]PL[PQ]Q

6

7.7e-148

[PS][MG]SM[ST]ERAR[LM]A[RK][VI]P[QL]PEPGL[KN]

7

2.8e-043

[DK][PV][AP][AT][AADGSTIDLA[ML]LY[SA]KFL[SN][HN]Q

8

5.4e-034

LGEL[NA]F[AGSV][MV]DQSC[FY]D[SA]LGLP[TAM][DP]

10

6.5e-027

[HP]GP[VL]RPDM[VL]LEGMVGN

11

7.1e-027

R[LM]LFPFEDLKP

12

9.0e-026

[HG][EG][GA]A[HQ]DLNLAFPHH[HG]

13

3.3e-024

[WM][PV][NPA][GT]AW[NS][ALS]PW[PI]

14

2.7e-011

[PQ][QP]FA[GT]VDLRRPKGY

15

3.1e-012

[EDQ][FY][MAPT]AFPSLESSS[VIM][CG][NG]

28

7.2e-209

[GEKR][DE][DE][KN][GER][EN][GKN][KS][LV]W[VI]PKT[LI]RID[DN][PA][DA]E[AV]A[KR]SSI[WR][SAT][TL][LFI]GI[KE][PG][DG][DK][RKPV]G[IM] [FD][KR][SPG][FR][QG][SC][KG]

29

2.9e-074

[KQ]T[EAQ][DGNS][DE][EGT][SA][SDN][QE][DEK][KE][VK]LKKPDKILP

30

1.1e-030

S[PSI][VST][CS][ST]M[SN][SGN][SC][FP][TV]LGKH[PS]R[DE][GS]D[]

31

6.2e-036

MDAA[HQ]W[HP]QGLGLVKPMEEM[LI]M

32

2.8e-027

[NM][G][LM]EQWR[AL][AQ]QMQSFPFFHAMDHQ

33

7.3e-026

[AG]HHHHGSSA

34

2.1e-030

R[RK][AL]RPQ[KH][ED][KQ][AP][LI]

35

6.2e-027

[STI][TFQ][AFNPT][NSTY][PAS][FDV][ADP][AGPT][DLP][VLS][PQ]PPAP[IM]FADQA[AT][AT][LF]ASLF[AG][PT]P[PR]P[PA][PF][LST][PFQ][VAS] [FAL][SNPQ][FAR]

36

2.6e-025

MQ[ED]F[QH][SP][IV]PGL[AT]GRLFGGAA[AD][AR][ADP][AID][RGIV][RAL]

37

1.2e-016

PMH[FI]CMDSDWLKG[IM]V

38

1.7e-036

LSSWCSIVPSLSTWEEPKYDSLDSFPDD[AT][ML]SLH[DE][CGH][GIM][IL]

39

8.9e-015

RVADHQHDDGRRAVRRGDVRALRRRRLPAHGPFVGTVVAAVTVVVVRCNL

40

2.8e-014

EEWMQEQDGLLCMRGRRCGRRGGCLPRPRDWFAALLAADPAAAAVTRDQ

41

2.3e-011

TVADM[AT]PF[MT]SLDAGIFELGD[AV][PS]PA[AD]YWN[AG]GSCWTDV[PQ]DP[NS]VYL

  1. a Numbers correspond to the motifs described in Figure 4. b Consensus amino acid sequences obtained from the analysis of the 81 Brachypodium, rice and barley Dof genes with the MEME software. Motifs from 1 to 15 are equivalent to the motifs 1 to 15 described in Additional files 2 and 3. Motif 1 corresponds to the DOF DNA-binding domain.