Table 1 Identification and prediction of miRNAs in N. attenuata
Nat-MIR family members | MFE | miRNA | Length (nt) | GC content | Hit in miRBase | E-value |
|---|---|---|---|---|---|---|
| Â | Â | Â | Â | (%) | Â | Â |
Nat-miR156a | −55.1 | ugacagaagagagugagcaca | 21 | 47.6 | bna-miR156 | 0.001 |
Nat-miR156b | −76.5 | ugacagaagagagugagcaca | 21 | 47.6 | bna-miR156 | 0.001 |
Nat-miR157 | −43.9 | uugacagaagauagagagcac | 21 | 42.9 | ath-miR157 | 0.001 |
Nat-miR159a | −62.3 | uuuggauugaagggagcucua | 21 | 42.9 | ath-miR159 | 0.001 |
Nat-miR159b | −90.6 | uuuggauugaagggagcucua | 21 | 42.9 | ath-miR159 | 0.001 |
Nat-miR159c | −104.3 | uuuggauugaagggagcucua | 21 | 42.9 | ath-miR159 | 0.001 |
Nat-miR160a | −61.6 | ugccuggcucccuguaugcca | 21 | 61.9 | ath-miR160 | 0.001 |
Nat-miR160b | −63.3 | ugccuggcucccuguaugcca | 21 | 61.9 | ath-miR160 | 0.001 |
Nat-miR162 | −43.9 | uggaggcagcgguucaucgauc | 22 | 54.5 | csi-miR162 | 0.0001 |
Nat-miR164 | −74.2 | uggagaagcagggcacgugca | 21 | 61.9 | ath-miR164 | 0.001 |
Nat-miR166a | −59.8 | ucggaccaggcuucauucccc | 21 | 61.9 | ath-miR166 | 0.001 |
Nat-miR166b | −51 | ucggaccaggcuucauucccc | 21 | 61.9 | ath-miR166 | 0.001 |
Nat-miR166c | −71.8 | ucggaccaggcuucauucccc | 21 | 61.9 | ath-miR166 | 0.001 |
Nat-miR167a | −42 | ugaagcugccagcaugaucua | 21 | 47.6 | ath-miR167 | 0.001 |
Nat-miR167b | −47 | ugaagcugccagcaugaucua | 21 | 47.6 | ath-miR167 | 0.001 |
Nat-miR168 | −78.3 | cccgccuugcaucaacugaau | 21 | 52.4 | aly-miR168 | 0.001 |
Nat-miR169a | −86.1 | cagccaaggaugacuugccga | 21 | 57.1 | ath-miR169 | 0.001 |
Nat-miR169b | −70.5 | uagccaaggaugacuugccugc | 22 | 50.0 | bna-miR169 | 0.001 |
Nat-miR171a | −70.1 | ugauugagccgcgucaauauc | 21 | 47.1 | vvi-miR171 | 0.001 |
Nat-miR171b | −61.4 | ugauugagccgcgucaauauc | 21 | 47.1 | vvi-miR171 | 0.001 |
Nat-miR171c | −44.9 | ugauugagccgcgucaauauc | 21 | 47.1 | vvi-miR171 | 0.001 |
Nat-miR171d | −60.4 | ugauugagccgcgucaauauc | 21 | 47.1 | vvi-miR171 | 0.001 |
Nat-miR172a | −53.4 | ugagaaucuugaugaugcugcau | 23 | 39.1 | vvi-miR172 | 0.001 |
Nat-miR172b | −49.5 | ugagaaucuugaugaugcugcau | 23 | 39.1 | vvi-miR172 | 0.001 |
Nat-miR172c | −61.7 | ugagaaucuugaugaugcugcau | 23 | 39.1 | vvi-miR172 | 0.001 |
Nat-miR172d | −35.2 | ugagaaucuugaugaugcugcau | 23 | 39.1 | vvi-miR172 | 0.001 |
Nat-miR319a | −97.5 | uuggacugaagggagcucccu | 21 | 57.1 | ath-miR319 | 0.001 |
Nat-miR319b | −89.7 | uuggacugaagggagcucccu | 21 | 57.1 | ath-miR319 | 0.001 |
Nat-miR319c | −95.4 | uuggacugaagggagcucccu | 21 | 57.1 | ath-miR319 | 0.001 |
Nat-miR390a | −67.6 | aagcucaggagggauagcacc | 21 | 57.1 | gma-miR390 | 0.001 |
Nat-miR390b | −58.1 | aagcucaggagggauagcacc | 21 | 57.1 | gma-miR390 | 0.001 |
Nat-miR393a | −41.7 | uccaaagggaucgcauugaucc | 21 | 45.5 | ath-miR393 | 0.0004 |
Nat-miR393b | −54.4 | uccaaagggaucgcauugaucc | 21 | 45.5 | ath-miR393 | 0.0004 |
Nat-miR394a | −41.7 | uuggcauucuguccaccuccau | 22 | 50.0 | vvi-miR394 | 0.0004 |
Nat-miR394b | −82.3 | uuggcauucuguccaccuccau | 22 | 50.0 | vvi-miR394 | 0.0004 |
Nat-miR396 | −56.4 | uuccacagcuuucuugaacug | 22 | 42.9 | ath-miR396 | 0.001 |
Nat-miR397 | −49.9 | ucauugagugcagcguugaug | 22 | 47.6 | ath-miR397 | 0.001 |
Nat-miR398 | −69.1 | uguguucucaggucaccccuu | 21 | 52.4 | ath-miR398 | 0.001 |
Nat-miR399 | - | ugccaaagaagauuugccccgu | 21 | 52.4 | ptc-miR399 | 0.001 |
Nat-miR403 | −38.2 | uuagauucacgcacaaacucg | 21 | 42.9 | ath-miR403 | 0.001 |
Nat-miR408 | −47.6 | augcacugccucuucccuggc | 21 | 61.9 | ath-miR408 | 0.001 |
Nat-miR413 | - | cuaguuucucuuguucugcuu | 21 | 38.1 | ath-miR413 | 0.015 |
Nat-miR414 | - | uccucuucaucaucaucuuc | 21 | 40.0 | ath-miR414 | 0.074 |
Nat-miR477 | −54.8 | acucucccucaagggcuucug | 21 | 57.1 | aqc-miR477 | 0.001 |
Nat-miR478 | −33.3 | ugacaugucuuauauuuuuag | 20 | 23.8 | ptc-miR478 | 0.005 |
Nat-miR482 | −53.1 | uuuccaauuccacccauuccua | 21 | 40.9 | sly-miR482 | 0.0004 |
Nat-miR828 | −46.7 | ucuugcucaaaugaguauucca | 21 | 36.4 | vvi-miR828 | 0.0004 |
Nat-miR845a | - | ugcucugauaccaaauugaug | 22 | 38.1 | ath-miR845 | 0.003 |
Nat-miR845b | - | uggcucugauaccaauugau | 22 | 40.0 | vvi-miR845 | 0.004 |
Nat-miR1128 | −85.4 | uacuacucccuccguuucaa | 20 | 45.0 | ssp-miR1128 | 0.081 |
Nat-miR1133 | −88.1 | cauauacucccuccgucccugaaa | 21 | 50.0 | tae-miR1133 | 0.017 |
Nat-miR1446 | −48.7 | uucugaacucucucccucaa | 20 | 45.0 | ptc-miR1446 | 0.003 |
Nat-miR1863a | - | gcucugauaccauguuaacu | 24 | 40.0 | osa-miR1863b | 0.008 |
Nat-miR1863b | - | gacucugauaccauguuaaaauag | 20 | 28.0 | osa-miR1863 | 0.02 |
Nat-miR1919 | −87.1 | aggcgagtcatctgtgacagg | 21 | 57.1 | sly-miR1919 | 0.029 |
Nat-miR2911 | −67.3 | ggccgggggacggacuggga | 20 | 80.0 | peu-miR2911 | 0.014 |
Nat-miR5281a | −51.9 | cauauaaauugaaacggagggag | 23 | 39.1 | mtr-miR5281b | 0.13 |
Nat-miR5281b | −69.9 | cauauaaauugaaacggagggag | 23 | 39.1 | mtr-miR5281b | 0.13 |
Nat-miR5281c | −34.2 | cauauaaauugaaacggagggag | 23 | 39.1 | mtr-miR5281b | 0.13 |